Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0379 ATGGCCAGTTTCGTAGGAACCACACAGAAGTGCACACTCTGCGACAAAACCGTGTACCCCGTCGATCGGTTAACCGCCGACGGTCGTGTTTACCATAAGGCTTGCTTCCGATGCCACCATTGCCGGAATACCCTCAAGCTGAGCAACTACTGTTCATTTGAGGGGGTGCTATATTGCAGACCCCATTATGATCAACTCTTCAAGCGAACTGGCAGCCTTGACAAGAGCTTTGAAGGAACACCCAAGATTCAAAAACCTGAAAAACTACCAACGGAGAATGAGAATGCAAAGATTATCTCAAGTGTGTTCTTGGGCACCAAAGACAAGTGTGCTGGTTGCCTAAAGACAGTTTATCCTACAGAGAGGGTAACAGTGAATGGGACTCCATATCACAAAGGGTGCTTCAAGTGCAGTAGAGGAGGATGTACCATAACCTCAGCCAACTTCATAACTCACGAGGGAAAGCTATACTGCAAACACCATCACATTCAACTCTTCAAAGAGAAAGGCAATTACAGCCAGCTTGACGGTGACCGCGCCGCCAGTCCTTCTCTCAAAGAAATGGAGGATGCTGTACAAGGTTTTGAAGATGGAGAGCAAGGTGGCAACGATGACTGTAACTCATTATGTGAAACAGAGAGTTCGATGGTTTCAAGCACTGCTTCTCCAACTTGTCATGATGAAAATGCTTCGTGTTCATCTTCTCATCGCGAGTTTGTTTCTGAATCTGATGATGCGGGTCAGCTTGCAGCAGGGGATGTTACTCCGATGATGAATCAAGACCCAAAGAGAGTTCTTGAAAAGCTGAACTTGCAGCTGTTAGATAAAAATGGAAGGGAAGTGCCAATACAGTGGGGAAAAAGGATCCTCATTGGTTTAGATGCTGAGTTTTGGATTGCTGCTACTCAACATGCAAGAACCCAGGAAATTCATCTCCCTAAGAATTTGACTCAGAAGGAAAAGACGCATAGCAAAAATGCCCCATCAAGCTCCAGAATTACTTTTGACATAAACATCTGA 1020 0.4529 MASFVGTTQKCTLCDKTVYPVDRLTADGRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKIQKPEKLPTENENAKIISSVFLGTKDKCAGCLKTVYPTERVTVNGTPYHKGCFKCSRGGCTITSANFITHEGKLYCKHHHIQLFKEKGNYSQLDGDRAASPSLKEMEDAVQGFEDGEQGGNDDCNSLCETESSMVSSTASPTCHDENASCSSSHREFVSESDDAGQLAAGDVTPMMNQDPKRVLEKLNLQLLDKNGREVPIQWGKRILIGLDAEFWIAATQHARTQEIHLPKNLTQKEKTHSKNAPSSSRITFDINI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0379 339 CDD LIM1_SF3 7 69 - -
Alju04g0379 339 Gene3D Cysteine Rich Protein 5 75 - -
Alju04g0379 339 Gene3D Cysteine Rich Protein 105 174 - -
Alju04g0379 339 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Alju04g0379 339 PANTHER OS06G0237300 PROTEIN 6 94 - -
Alju04g0379 339 SMART lim_4 10 62 IPR001781 -
Alju04g0379 339 SMART lim_4 109 161 IPR001781 -
Alju04g0379 339 Pfam LIM domain 110 165 IPR001781 -
Alju04g0379 339 Pfam LIM domain 11 65 IPR001781 -
Alju04g0379 339 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Alju04g0379 339 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Alju04g0379 339 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Alju04g0379 339 MobiDBLite consensus disorder prediction 322 339 - -
Alju04g0379 339 CDD LIM2_SF3 110 170 - -
Alju04g0379 339 FunFam LIM domain and actin-binding 1 104 174 - -
Alju04g0379 339 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Alju04g0379 339 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Alju04g0379 339 FunFam LIM domain and actin-binding 1 5 75 - -
Alju04g0379 339 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Alju04g0379 339 MobiDBLite consensus disorder prediction 318 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0379 Alju-ChrAlju04 3268091 3272700 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Alju04g0379 LIM 2.1e-12 CL0167