Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0364 ATGGCTTTAGAAGCTCTTAATTCTCCAACTACTGCCCCAACTTCCTTCACCTTCAACCATGACCAAGAAGATTATGATGATCTCGATCTTCACTGGGCCAAGGGCAAGCGTTCCAAACGACCTCGTTTCGACTCCGACAACCCTCCTTCTGAAGAAGAGTACCTCGCTCTCTGTCTCATCATGCTTGCCCACAGCGGCCACAACAACGCTGCCGCCGCCGCTTCTCCGCCGCGTCCTCCTCCTAATAATCCTGTGAAGCCCTCTCACAGGTGTACCGTATGCAATAAAGTCTTCTCTTCTTACCAAGCACTCGGTGGCCACAAGGCCAGCCACCGTAAGTCCTCCTCGGAGTCCGCCGCCGCCGACAACACCTCCACCTCCTCTGGTGCCGCCGCTACCGGAAGGTTGCACGAGTGTTCCATCTGTCATAAGGTCTTCCCTACTGGTCAGGCCTTGGGGGGACACAAGAGATGTCACTACGACGGTGGCAACGCAAACAGCAGTAGCGCCGGCGCCGCCGGCGTGTCGTCGTCGGAGGGAGGTGGCGCGTCTACTGTCAGCCTCCGCGGGTTCGACTTAAACCTGCCGGCACCGCTCATGGACTTATCTCGGCCGGCAGGACTTGGAGACGATTCCGGGATGATGAAGAAGATCTGTGTAGAGCAAGAGGTGGAGAGTCCGTTGCCGGTGGGTGCCGCCGGTAATAAGAGAAGACGTTTGCTTTTTACAGGTGATGAAGAAGACGATGTCAAGCCTTCGTTGTTGTTACAGAATTAA 777 0.5586 MALEALNSPTTAPTSFTFNHDQEDYDDLDLHWAKGKRSKRPRFDSDNPPSEEEYLALCLIMLAHSGHNNAAAAASPPRPPPNNPVKPSHRCTVCNKVFSSYQALGGHKASHRKSSSESAAADNTSTSSGAAATGRLHECSICHKVFPTGQALGGHKRCHYDGGNANSSSAGAAGVSSSEGGGASTVSLRGFDLNLPAPLMDLSRPAGLGDDSGMMKKICVEQEVESPLPVGAAGNKRRRLLFTGDEEDDVKPSLLLQN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0364 258 SUPERFAMILY beta-beta-alpha zinc fingers 89 159 IPR036236 -
Alju04g0364 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Alju04g0364 258 MobiDBLite consensus disorder prediction 69 88 - -
Alju04g0364 258 Gene3D Classic Zinc Finger 87 159 - -
Alju04g0364 258 MobiDBLite consensus disorder prediction 1 21 - -
Alju04g0364 258 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Alju04g0364 258 MobiDBLite consensus disorder prediction 116 130 - -
Alju04g0364 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Alju04g0364 258 MobiDBLite consensus disorder prediction 105 130 - -
Alju04g0364 258 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Alju04g0364 258 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 37 197 IPR044653 GO:0003700
Alju04g0364 258 Pfam C2H2-type zinc finger 137 161 - -
Alju04g0364 258 Pfam C2H2-type zinc finger 89 113 - -
Alju04g0364 258 SMART c2h2final6 89 111 IPR013087 -
Alju04g0364 258 SMART c2h2final6 137 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0364 Alju-ChrAlju04 3169791 3170567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0364 1 229 C2H2 Transcription Factor Family AT1G27730 44.813 1.24e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju04g0364 zf-C2H2_6 7.5e-13 CL0361