Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0349 ATGTCAGACCAGCTGCATACAATTGATCCGGGAGCTACACATTCTGAATTGCTAGAAAAAACTAATCAGATTGGCCCTGAATCTTTGGACAATGAACAAAGGGTTGTTGGTATTAGGGAAACCACCACTCTTCTTGATGAAAAATCACCTTCAGATGGTGTGACTGGGAATTCTGTTATTCAACTTCCTGCACAACCTCAATGTGACTTAGACAAGAGTTGTCAAACTGAAGAAGGTTCAAGTTTTCAACATAATACTTTAGAACCGGGCAATGCTATTGGCATGGATGCTTCATCAGATCACACGAGTAGCGAAACTAGAAATTCAATGTGCCATATCGATAATGCCTCAGAACAGTTGCATACACTTCCTCCCAGAACTGCTTATTTTGAAATGTCTGAGAAAACTAATCAGACTGGCTCTGAATTTTTGAATAATGAACAAAGGGTCCTAGGTACTGGGGAAACCAGCTCTCTTCTTGATGGAAAACAACTTACAGTTTCTGATGGTATGACTGGAGATTCTGTCATTCAATTGCCAACACAATCGCAATGTGACTTAGAAAATAGTTGCCAGAATGGAGGAAGTTCATGCTTTCAGCATAATACCTTAAAACAGGTTTCTGGTTCTTTATTGAATGATGAATCCCAGAGCAAATGTCAGTGGGCCTCCCAAAATATTCATAATGAAACTGTGCAAAGAAGTGGTGCAAATGAACAAGTAGTTCCACCTTCTCAAGACGTTGCCAAGGGCAGTAGTCCTAACTCTCTGCAAAGAAACTCCAAACGGGCAAGTCGTGCCCAGTTAGGAGGCAAGGATAGAAGAACTACAGCATCATTGAAGAAAAAATACATGCTAAGAAGTAGTGACAGAGTTTTGCGGTCTAGGGTCTGTGAAAAACCTAAACCACCCCAATCAAACACTGATCCGGTTAATTTGGATCATGCTGGAGAAAATAGAAGAAAACGCAAGAAGAAGAATAAGGGTAGAGGAAGGAGAGTGACAGATGAGTTTTCAAGAATCAGAGCACGCCTAAGATATTTTTTAAGTCGAGTGAGCTATGAGCAGAACTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATATAGCATGGAAAAATTAAAGCCTGAGAAGGAGCTTCAACGTGCTAAGTCTAAAATACTTGGTTTTAAATTGAAAATTAGGGATTTGTTTCAACATTTGGATACACTGTGTGCTGAAGGGAGGCTTCCAAAATCTTTGTTTGATTCTGAAGGAGAGATTTGCAGTGAGGATATATTTTGTGCAAAATGCGGGTCCAAAGACTTGACCACTGGTAATGATATAATACTTTGTGATGGTGCATGTGATCGTGGATTTCACCAGTTCTGTTTGGAACCTCCATTGTTATCTGAGAACATTCCACCTGATGATGAGGGTTGGCTATGCCCTGGATGTGATTGCAAGGATGACTGTTTTGATCTCCTCAATGACTCCTTTGGAACAAGCCTCTCTATTTGTGATTCCTGGGAGAGGGTTTTTCCAGAGGCAGCTGCAGCTGCTGGAAATAAAGTGGATGACAACTTGGGACTTCCATCAGATGATTCTGGTGATGATGATTATAATCCTGATGTTGCAGAAGATGAGGACGTTGAAGGAGGCAAGTCAAGTTCTGATGAGTCTGAGAATGCTTCTGCTTCTGAGAAAATGGGGGCTTCACGTAATGAGGATCCATACTCAGGCCTTCCTTCTGAAGATTCAGAGGACAACGATTATGATCCAAATGCTCTAGATAATGAGAAAGATGTAGCTGAAGAAAGTTCAAGTTCTGATTTCACGTCTGATTCTGAGGACCTTGCTGACGTAGTTAAGGGTAATGCATTATCTGGACAGGTTAACTATTCTGTACCTGCATCATCTTTGCCAGAGCTAGAACCTGGTGAAGAAGATTCCACTCCTGTTTCTGGGAAAAGACAAATTGAAAGGTTGGACTACAAAAAACTTTATGATGAGACATACCAAAATGCTTCATCTGACACTAGCGATGATGAAGATTGGACAGCTAGCCCTGCTTCAAGTAGGAAAAAGAAAGTCACTAGCAAAGGGCCGTCAATGTCACCAAATGGGAAAACCTCCATACTGGATCATATGCAGAAAGAAACTGAAAATACTCCTAGGAGTAATACTCGTCCAACTAAAGTTGAAAATATGGACAATTCACCCAGTAAATCACTTGAAGGCTCTAAGAGGGCTGGTTCAAATGAGAAAAAACGTGGATCTTCAACTTACAAAAGACTTGGGGAAGATGTAGTTAAGGTACTTCACAAGAACTTTAAAGAAAATCAGTACCCAGACCGTGCCACAAAAGAAAGCTTAGCACAAGAACTTGGACTTACTTTCAACCAGGTTAGCAAATGGTTTGAGAATGCTCGTTGGAGCTTTCGGAATTCCCCACGTATGGAAGCCATGGCGAGCAAAAGTGCTTCACGGGTTGCCGCTTCCAGCGGAGTTGAAAGTGAAATAGTACCTGGTGATGAGGAGAGGGACGCAAAGCCGGTGCCTCAGGAGGGGAATAATATACAGAAATCAAAATCCCAAAGCTCTAGAAAGAGGAAGCAAAATACAGATACTGAGGAATCTGGTGCAAATATAAACATTGATAATGCGGCGGCAACAAATCCTCCTGTTCACTCACCCAGAGCTGGTGAAGTGCAAAGAAATCACAAAATGAAAACAAGGAAGAGAAAATGA 2733 0.4146 MSDQLHTIDPGATHSELLEKTNQIGPESLDNEQRVVGIRETTTLLDEKSPSDGVTGNSVIQLPAQPQCDLDKSCQTEEGSSFQHNTLEPGNAIGMDASSDHTSSETRNSMCHIDNASEQLHTLPPRTAYFEMSEKTNQTGSEFLNNEQRVLGTGETSSLLDGKQLTVSDGMTGDSVIQLPTQSQCDLENSCQNGGSSCFQHNTLKQVSGSLLNDESQSKCQWASQNIHNETVQRSGANEQVVPPSQDVAKGSSPNSLQRNSKRASRAQLGGKDRRTTASLKKKYMLRSSDRVLRSRVCEKPKPPQSNTDPVNLDHAGENRRKRKKKNKGRGRRVTDEFSRIRARLRYFLSRVSYEQNLIDAYSGEGWKGYSMEKLKPEKELQRAKSKILGFKLKIRDLFQHLDTLCAEGRLPKSLFDSEGEICSEDIFCAKCGSKDLTTGNDIILCDGACDRGFHQFCLEPPLLSENIPPDDEGWLCPGCDCKDDCFDLLNDSFGTSLSICDSWERVFPEAAAAAGNKVDDNLGLPSDDSGDDDYNPDVAEDEDVEGGKSSSDESENASASEKMGASRNEDPYSGLPSEDSEDNDYDPNALDNEKDVAEESSSSDFTSDSEDLADVVKGNALSGQVNYSVPASSLPELEPGEEDSTPVSGKRQIERLDYKKLYDETYQNASSDTSDDEDWTASPASSRKKKVTSKGPSMSPNGKTSILDHMQKETENTPRSNTRPTKVENMDNSPSKSLEGSKRAGSNEKKRGSSTYKRLGEDVVKVLHKNFKENQYPDRATKESLAQELGLTFNQVSKWFENARWSFRNSPRMEAMASKSASRVAASSGVESEIVPGDEERDAKPVPQEGNNIQKSKSQSSRKRKQNTDTEESGANINIDNAAATNPPVHSPRAGEVQRNHKMKTRKRK 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0349 910 Gene3D - 754 824 - -
Alju04g0349 910 MobiDBLite consensus disorder prediction 291 335 - -
Alju04g0349 910 MobiDBLite consensus disorder prediction 813 910 - -
Alju04g0349 910 ProSitePatterns Zinc finger PHD-type signature. 429 480 IPR019786 -
Alju04g0349 910 MobiDBLite consensus disorder prediction 70 88 - -
Alju04g0349 910 CDD PHD_PRHA_like 428 480 IPR045876 -
Alju04g0349 910 ProSiteProfiles 'Homeobox' domain profile. 751 811 IPR001356 GO:0003677
Alju04g0349 910 MobiDBLite consensus disorder prediction 70 108 - -
Alju04g0349 910 MobiDBLite consensus disorder prediction 743 761 - -
Alju04g0349 910 MobiDBLite consensus disorder prediction 231 265 - -
Alju04g0349 910 Pfam PHD-finger 428 483 IPR019787 -
Alju04g0349 910 SMART HOX_1 748 815 IPR001356 GO:0003677
Alju04g0349 910 MobiDBLite consensus disorder prediction 588 602 - -
Alju04g0349 910 MobiDBLite consensus disorder prediction 718 742 - -
Alju04g0349 910 MobiDBLite consensus disorder prediction 526 541 - -
Alju04g0349 910 MobiDBLite consensus disorder prediction 1 32 - -
Alju04g0349 910 MobiDBLite consensus disorder prediction 644 663 - -
Alju04g0349 910 SUPERFAMILY Homeodomain-like 749 814 IPR009057 -
Alju04g0349 910 MobiDBLite consensus disorder prediction 665 708 - -
Alju04g0349 910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 489 IPR013083 -
Alju04g0349 910 FunFam Homeobox protein HAT3.1 409 485 - -
Alju04g0349 910 SMART PHD_3 428 481 IPR001965 -
Alju04g0349 910 MobiDBLite consensus disorder prediction 814 828 - -
Alju04g0349 910 MobiDBLite consensus disorder prediction 872 886 - -
Alju04g0349 910 MobiDBLite consensus disorder prediction 518 761 - -
Alju04g0349 910 ProSiteProfiles Zinc finger PHD-type profile. 426 483 IPR019787 -
Alju04g0349 910 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 228 873 - -
Alju04g0349 910 Pfam Homeodomain 761 806 IPR001356 GO:0003677
Alju04g0349 910 SUPERFAMILY FYVE/PHD zinc finger 418 486 IPR011011 -
Alju04g0349 910 MobiDBLite consensus disorder prediction 231 279 - -
Alju04g0349 910 CDD homeodomain 759 811 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0349 Alju-ChrAlju04 3022965 3027664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0349 226 812 Homeobox Transcription Factor Family AT3G19510 41.433 2.42e-137 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Alju04g0349 PHD 6.3e-11 CL0390