Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0307 ATGGCTACCGTTAATAAATCAACAACAATGGTGTCTTCAGACTCCTTAGAACAGAAGGGGAAAAATATGGCTGAATCAACTGCCAATATGCTTCACTGTCCTTTGATCCAGCAGCCTCGTAGCTCCTTGGATGGCCCAGTGGCTATTCTGTGGGATATTGAAAATTGTCCAGTTCCAAGTGATGTGCGCCCTGAAGATGTAGCTAATAATATAAGAATGGCTTTGAGGGTGCACCCAGTAATTAAAGGAGCCGTTATGATGTTTTCTGCTTATGGCGATTTCAATGCCTTCCCCAGGCGACTCAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTCATTGATGTTCCCAATGGGAGAAAGGATGCTGCAGATAAGGCTATCTTAGTGGACATGTTCTTATTTGCCCTTGACAACCCTCCCCCTTCCTCCATCATGCTGATATCCGGGGATGTTGATTTTGCTCCAGCACTTCACATTCTCGGTCAACGTGGTTATACAGTTATTCTTGTCATCCCAGCTAATGTGGGTGTTTCATCTGCCCTAAGTAATGCGGGTAAATTTGTTTGGGACTGGCCTAGTGTGGCTCGTGGTGAAGGCTTTGTGCCTCCCTCAAAGGCTTTAGTTCCACCTCGTATGAATCCAGCTGAGGTTACTGGATATCTGATGGGGATCCATATCAATGACAATACTCATGGACAAAATGAGGAAGAAGCAATAGTTTACAGAGGAATGTCACAGAGCTATTATAACTCTAGGGATTTCTCAGTTGTGTCACAGTCTCCGCCTGAATACAACATTAGCACGTTAAATGGAGGACCCTCTCTTCCTACAACTTTAAGGTCACACAGCCTTCCTACTGTGTTTAATGATGCTTCAGGAGGACCTATGTCTTCCACTGACCAAAATGAATTCCCATTGTGGGTACAACCTGGGGATTTAAATGGTCTCAAGTGCCAATTGGTAAAGTTGCTTGAACTTTTAGGAGGATCCCTGCCCCTGACCCGGGTTCCTGCTGAGTATCATAAATGTTTTGGGAGGCCTCTTTATGTATCAGAATATGGAGCATTCAAGTTAGTAAATCTTTTCAAGAAGATGGGTGATTCCATGGCAGTAGAAGGGAAAGGGAATCGGAAGTTTGTGTATCTTCGGAATTGGAAAGCAAGCCCAAGTGCACCTCCTTTGGCTCTAGCACAGAAAGATAAGAAAGGAAGGGGGGCTCAGGAAGAGAATGTGGATATTGTCACCGGTGGATGCTCTTCAGATGAGTTCTCAGATGAAGATAGAATTGTCATTGAAGAGCAGGATGAGAGAAGTGGAATAGGAAAGAGCCATCAGGGAAGAGCATCCAGATGTGAAATTGATGACAATCTTGAGCAGTTCAAGTATGAACTACAGGAGATTCTAGTCAGCTATTCTTGCCGAATATTTCTAGGTTGTTTCGAAGCAATATACCAGCAACGGTACAAGAAACAACTGGAGTATCGGAGATTTGGTGTGGACAAGTTGGAGGATTTGCTTGAGAAGGCGAGTGACGTGGTGGAATTACATGAAGAACCAGTAAGCAGCAGGAAGTTCCTGTCTGCTGTGGGTGGGTAG 1596 0.4467 MATVNKSTTMVSSDSLEQKGKNMAESTANMLHCPLIQQPRSSLDGPVAILWDIENCPVPSDVRPEDVANNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPANVGVSSALSNAGKFVWDWPSVARGEGFVPPSKALVPPRMNPAEVTGYLMGIHINDNTHGQNEEEAIVYRGMSQSYYNSRDFSVVSQSPPEYNISTLNGGPSLPTTLRSHSLPTVFNDASGGPMSSTDQNEFPLWVQPGDLNGLKCQLVKLLELLGGSLPLTRVPAEYHKCFGRPLYVSEYGAFKLVNLFKKMGDSMAVEGKGNRKFVYLRNWKASPSAPPLALAQKDKKGRGAQEENVDIVTGGCSSDEFSDEDRIVIEEQDERSGIGKSHQGRASRCEIDDNLEQFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYRRFGVDKLEDLLEKASDVVELHEEPVSSRKFLSAVGG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0307 531 CDD PIN_limkain_b1_N_like 46 172 - -
Alju04g0307 531 Pfam NYN domain 46 185 IPR021139 GO:0004540
Alju04g0307 531 CDD LOTUS 313 382 - -
Alju04g0307 531 ProSiteProfiles OST-type HTH domain profile. 312 384 IPR025605 -
Alju04g0307 531 ProSiteProfiles OST-type HTH domain profile. 456 530 IPR025605 -
Alju04g0307 531 Gene3D - 452 522 IPR041966 -
Alju04g0307 531 Gene3D - 312 381 IPR041966 -
Alju04g0307 531 Pfam OST-HTH/LOTUS domain 316 379 IPR025605 -
Alju04g0307 531 Pfam OST-HTH/LOTUS domain 457 519 IPR025605 -
Alju04g0307 531 Gene3D - 42 192 - -
Alju04g0307 531 CDD LOTUS 457 519 - -
Alju04g0307 531 MobiDBLite consensus disorder prediction 1 23 - -
Alju04g0307 531 PANTHER LIMKAIN B LKAP 31 494 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0307 Alju-ChrAlju04 2664615 2666210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0307 43 197 C2H2 Transcription Factor Family AT5G61190 41.935 3.81e-28 117