LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju04g0298	ATGTCCTCCGACCCACCACCTTCCTCCTCCTCTTTTCAACCTCCCACCACCCTCTCCCCCGACCAAGAACTCTCTGTCATCGTCGCAGCACTCACCAACGTCGTCATTGGCTCCACATCCGACAATCTCCCTCACCACCTCAACTTTCCCTATTCCTGTGCCACTGGCGGCAACGTCGTCCACCATGCCAACCACGCGGGGCCATCCCTGATTGTTGAAGACTGCCGCCACCCTGATTTCGGACTTGCCTCCAGCTCCGGCTTGAAGTTTTTACCTGAAGAGATGGCAAAAAAAGGCGCGAACAGACAGCCGCAGAAGAGGGCGAAGAAGAAGTACAGGGGAGTGAGGCAGAGGCCCTGGGGGAAATGGGCTGCAGAGATTCGAGACCCGAGACGGGCGACCCGGGTCTGGCTGGGAACCTTCAAGACGGCCGAGGAAGCAGCTCGCGCGTACGATAAAGCGGCCATAGAGTTCCGTGGGCCTCGCGCTAAGTTGAATTTTCCTTTCTCTGATGACTCGTTGCTGAATTTGCAGCCCACTCAGCTACGGGAAGCTCCTTCAACTTCGGCAGCGGCGTCGGTGGCTGAGCAGGGGAATACCGAGAATCCGAACAGCGGAATGGAAGCGATGGGGATTGAGGATGCTGGTGAATTCTGGGATAGGATTGGAAACGCAGATTTGGAACAGTGGTTGATGGATTTTCCCACCGAAAACGGTTCTGACTCTGCTCCGGGAACTACTCAGAGTTGGTGA	753	0.5644	MSSDPPPSSSSFQPPTTLSPDQELSVIVAALTNVVIGSTSDNLPHHLNFPYSCATGGNVVHHANHAGPSLIVEDCRHPDFGLASSSGLKFLPEEMAKKGANRQPQKRAKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFKTAEEAARAYDKAAIEFRGPRAKLNFPFSDDSLLNLQPTQLREAPSTSAAASVAEQGNTENPNSGMEAMGIEDAGEFWDRIGNADLEQWLMDFPTENGSDSAPGTTQSW	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju04g0298	250	FunFam	Ethylene-responsive transcription factor 2	110	169	-	-
	Alju04g0298	250	CDD	AP2	110	168	IPR001471	GO:0003700\|GO:0006355
	Alju04g0298	250	Gene3D	AP2/ERF domain	110	169	IPR036955	GO:0003700\|GO:0006355
	Alju04g0298	250	SUPERFAMILY	DNA-binding domain	111	170	IPR016177	GO:0003677
	Alju04g0298	250	SMART	rav1_2	111	174	IPR001471	GO:0003700\|GO:0006355
	Alju04g0298	250	MobiDBLite	consensus disorder prediction	183	206	-	-
	Alju04g0298	250	ProSiteProfiles	AP2/ERF domain profile.	111	168	IPR001471	GO:0003700\|GO:0006355
	Alju04g0298	250	Pfam	AP2 domain	111	160	IPR001471	GO:0003700\|GO:0006355
	Alju04g0298	250	PANTHER	DNA-BINDING DOMAIN	95	190	IPR044808	GO:0003700\|GO:0009873
	Alju04g0298	250	PRINTS	Ethylene responsive element binding protein signature	134	150	IPR001471	GO:0003700\|GO:0006355
	Alju04g0298	250	PRINTS	Ethylene responsive element binding protein signature	112	123	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju04g0298	Alju-ChrAlju04	2567416	2568168	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju04g0298	109	189	AP2-EREBP Transcription Factor Family	AT2G33710	69.136	1.63e-32	117

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju04g0298		AP2	2e-15	CL0081