Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0281 ATGATCCAATCCCCTCTCAATCCCTCCGTATATAAACCCACCCCAATCTTCTACTTCTTCCTCTTTCCACCTCTCTGTGTGTGTCTCTCTCTCTGTACCTTACCTGGTCTCGGCCTCCGACCCTGCTTGGACCAGGTCTTCTCCTTCTCTCTTTCTCTCTACTCTCAACTCTTAATTTCAGCTCCACAACTTCCAGAGTCGGAGAGAGGAAACAAGGTACAGAGAAGCTCGATAGAAGCTATGGCTCAGCCCACCAACACGGCGGATCTGAATCAGCACCAGCACCAGCAGCAGTGGACGACGCAGCAACCGCATCACTATCAGCAGCAATGGATGGCTATGCAGTACCCTGCTGCCGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCGCAGCATTACACGCCTTACGTCCACCATTATATGCCCCCTCACCAGCCGCAGCAGCACAAGCCGCAGCCGTATCAGCAGCAGCAGCAGAAGCAAGGGTCGTCCGATGAGATCAGGACGATATGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTATCTCCATAACTGTTTTGCTCATACAGGCGAGGTTGTATCAGCCAAGGTTATACGAAATAAACAAACTGGCCAGTCAGAGGGGTATGGATTTCTTGAGTTTTATTCACGTGCAACAGCTGAGAAAGTTTTGAACAACTACAATGGTGCTATGATGCCAAATACTGATCAGCCCTTTCGTCTAAATTGGGCTACTTTCAGCGCGGGTGATAGGAGATCTGATGCTAGTTCTGATCTGTCTATATTTGTTGGGGACCTGGCTGTAGATGTTACTGATGCTATGCTGCATGAAACCTTTGCTAGCAAATATACATCTGTAAAGGGAGCCAAAGTTGTTATTGATTCAAACACTGGGCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGAAACTGAGAGGTCTAGGGCCATGACTGAAATGAATGGATGCTATTGTTCAAATCGGCCTATGCGTATAGGTGTTGCAACCCCAAAGAAGTCCCATGGGTATCAACAACAATATTCTTCCCAAGCTGTAGTATTAGCTAATGGACACTCATCGAACGGTGCCACCACACAAGGTTCCCAGCCTGAAGGGGACTCAAATAACACAACTATTTTTGTTGGAGGCCTCGATTCTGATGTTAGAGATGATGATCTTAGACAACCATTTTTGCAATTCGGTGAGGTTGTCTCAGTCAAAATACCTGTGGGTAAAGGTTGTGGTTTTGTTCAATTTTCTGACAGAAAGAATGCTGAGGAAGCACTTCAAGCATTGAACGGGACAGTAATTGGGAAGCAGACCGTACGGCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACAGATTCCAATGGAGGTTATTATGGAAGCCAGGGGCCTGCCGTGCGACAAAACCAGGATTTCAGTATGAACGTTGCTGCTGCTGCAGTTCAAGGGGCATCTTGA 1488 0.4738 MIQSPLNPSVYKPTPIFYFFLFPPLCVCLSLCTLPGLGLRPCLDQVFSFSLSLYSQLLISAPQLPESERGNKVQRSSIEAMAQPTNTADLNQHQHQQQWTTQQPHHYQQQWMAMQYPAAAMAMMQQQMMMYPQHYTPYVHHYMPPHQPQQHKPQPYQQQQQKQGSSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFLEFYSRATAEKVLNNYNGAMMPNTDQPFRLNWATFSAGDRRSDASSDLSIFVGDLAVDVTDAMLHETFASKYTSVKGAKVVIDSNTGRSKGYGFVRFGDETERSRAMTEMNGCYCSNRPMRIGVATPKKSHGYQQQYSSQAVVLANGHSSNGATTQGSQPEGDSNNTTIFVGGLDSDVRDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEALQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGYYGSQGPAVRQNQDFSMNVAAAAVQGAS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0281 495 Gene3D - 250 355 IPR012677 -
Alju04g0281 495 FunFam Polyadenylate-binding protein RBP47B 256 353 - -
Alju04g0281 495 Gene3D - 169 249 IPR012677 -
Alju04g0281 495 SMART rrm1_1 264 338 IPR000504 GO:0003723
Alju04g0281 495 SMART rrm1_1 171 246 IPR000504 GO:0003723
Alju04g0281 495 SMART rrm1_1 383 450 IPR000504 GO:0003723
Alju04g0281 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 342 IPR000504 GO:0003723
Alju04g0281 495 FunFam polyadenylate-binding protein RBP47 isoform X2 120 255 - -
Alju04g0281 495 CDD RRM2_SECp43_like 262 341 - -
Alju04g0281 495 FunFam Polyadenylate-binding protein RBP47 364 478 - -
Alju04g0281 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 334 IPR000504 GO:0003723
Alju04g0281 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 239 IPR000504 GO:0003723
Alju04g0281 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 384 447 IPR000504 GO:0003723
Alju04g0281 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 250 IPR000504 GO:0003723
Alju04g0281 495 MobiDBLite consensus disorder prediction 141 165 - -
Alju04g0281 495 SUPERFAMILY RNA-binding domain, RBD 263 455 IPR035979 GO:0003676
Alju04g0281 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 382 454 IPR000504 GO:0003723
Alju04g0281 495 SUPERFAMILY RNA-binding domain, RBD 137 253 IPR035979 GO:0003676
Alju04g0281 495 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 159 458 - -
Alju04g0281 495 CDD RRM1_SECp43_like 171 251 - -
Alju04g0281 495 Gene3D - 360 483 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0281 Alju-ChrAlju04 2410716 2414980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0281 169 451 Eukaryotic Initiation Factors Gene Family AT2G23350 28.767 4.27e-27 113