Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0272 ATGGGGAGGCCAAGGTGCTTCTTGGACATCAGCATTGGCGATGAGCTAGAAGGGAGGATCGTGGTGGAGCTTTTCGACGACGTCGTTCCCAAAACCGCCGAGAACTTCAGAGCCCTCTGCACCGGCGAGAAAGGCATCGCTCCTAACACTGGCCTACCCCTCCATTACAAGGGGTGTTGCTTCCATCGGATTATTAGAAGCTTTATGATCGAAGGAGGAGATATATCTGCTGGAGATGGTACAGGTGGAGAATCTATATATGGGATGGAGTTTGAAGATGAGAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAATTCTGGCCCTAACGCCAATGGGTCTCAGTTTTTTATTACCACTACTCGAACTCCTCATCTTGATGGTAAGCATGTGGTATTTGGGAAGGTAATAAAAGGAATGGGAGTGGTCCGCTTTATGGAGCATGTTACGACTGGCGATGAAGATCGCCCCGTTGTTGATGTTAAAATTGTGGACTGTGGAGAAATTCCTCAGGGAGCAGATGATGGAATATCTAACTTTTTCAAAGACGGTGATACTTATCCTGACTGGCCAGCAGACCTTGATGAAAGCCCTAATGATCTCCATTGGTGGATGGATGCTGTTGATTCTATTAAAAATTTTGGTAACGGGTACTTCAAGAAACAAGATTATAAAATGGCTTTAAGGAAGTATCGAAAGGCTCTAAGCTACCACGATCTTTGCTGGGAGAAAGAAGGAGTTGATGCAGACAACAGTTCCTGTTTGAGAAAAACAAAGTCTCAGATTTTTGCAAACTGCTCTGCTTGTAAATTGAAGTTAGGGGACCTCAAAGGAGCATTATTAGATACAGAATTTGCAATGCGCGAAGCAGACAACAATGTCAAAGCTTTGTTTCGCCAAGGGCAGGTATACGTGGCGCTCCATGACATTGATGCTGCAGTTGAAAGCTTCAAAAAGGCACTAATCTTGGAGCCAAATGATACTGGAATCAAAAAGGAACTTGCTGCTGCCAGGAGGATGGTGAGTGTATCTGCAAGTTTAGCCAAAGATTCTAGCATCAAACAAATGCCCATTGTGAATGGAGATGCATTTTATGAAACCGCTAGCGATGCTTCATCTGATTCTGATATTTACAGTTTGACTATTGGCGGGTATGGATTCTTTGGGGCTACAGGACCCTTCATGTTCCTTTTAATAGTTGTGGATGACTGA 1224 0.4387 MGRPRCFLDISIGDELEGRIVVELFDDVVPKTAENFRALCTGEKGIAPNTGLPLHYKGCCFHRIIRSFMIEGGDISAGDGTGGESIYGMEFEDENFELKHERKGMLSMANSGPNANGSQFFITTTRTPHLDGKHVVFGKVIKGMGVVRFMEHVTTGDEDRPVVDVKIVDCGEIPQGADDGISNFFKDGDTYPDWPADLDESPNDLHWWMDAVDSIKNFGNGYFKKQDYKMALRKYRKALSYHDLCWEKEGVDADNSSCLRKTKSQIFANCSACKLKLGDLKGALLDTEFAMREADNNVKALFRQGQVYVALHDIDAAVESFKKALILEPNDTGIKKELAAARRMVSVSASLAKDSSIKQMPIVNGDAFYETASDASSDSDIYSLTIGGYGFFGATGPFMFLLIVVDD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0272 407 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Alju04g0272 407 SUPERFAMILY TPR-like 209 342 IPR011990 GO:0005515
Alju04g0272 407 Pfam Tetratricopeptide repeat 299 331 IPR013105 -
Alju04g0272 407 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Alju04g0272 407 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Alju04g0272 407 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Alju04g0272 407 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Alju04g0272 407 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Alju04g0272 407 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Alju04g0272 407 CDD cyclophilin_ABH_like 4 171 - -
Alju04g0272 407 SUPERFAMILY Cyclophilin-like 3 175 IPR029000 -
Alju04g0272 407 ProSiteProfiles TPR repeat profile. 212 245 IPR019734 GO:0005515
Alju04g0272 407 SMART tpr_5 212 245 IPR019734 GO:0005515
Alju04g0272 407 SMART tpr_5 298 331 IPR019734 GO:0005515
Alju04g0272 407 SMART tpr_5 264 297 IPR019734 GO:0005515
Alju04g0272 407 FunFam peptidyl-prolyl cis-trans isomerase D 210 360 - -
Alju04g0272 407 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Alju04g0272 407 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Alju04g0272 407 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Alju04g0272 407 Gene3D - 1 179 IPR029000 -
Alju04g0272 407 Gene3D Tetratricopeptide repeat domain 208 359 IPR011990 GO:0005515
Alju04g0272 407 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0272 Alju-ChrAlju04 2325373 2328954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0272 18 170 U-box Gene Family AT5G67530 45.455 3.11e-35 135