Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0248 ATGAGAATGCTGCGACCTTGCTTTCACAAGCTTATTTGTCCCTCCACGCTCCAATCTCGGCAGCTGATTATTCCAGATCATTTTCTGAGAAAATTTGGGGGTGAGCTTTCTACAGTTGCCACCCTCACTGTTCCAGATGGCAGTGTCTGGCGAGTAGGATTAAAAAGGTTGGGCAACAAATTTTGGCTCCTTGATGGCTGGCAGGAATTTGTTCAACGCTACTCCATTGGTGTTGGTTACCTGCTGGTATTCAGATATGAAGGGAAATCATCATTCAATGTTCATATTTTCAATTTGGCTACTTGTGAGATAAATTACCAATCAAACACCCGAAGCAGTAATGAAGGGACTTTCTTTCCAAATCAACATCTTAATTTTGATGATATTGAAGATGAAGAAGACTCCATTGAATTCTTAGATTCATTACCTTCATCTGTTACTCCTGGTGCATTGCAGAACAAGGCTTTTCCTGGAACTCCAGCATTGCAGAATTTGTTCCATGGGTCTAAACTTAACTCGATAAACTGGGGAGATGGGAGCAATTCCCTTTCTTCTAAGGGTGCCAATTCTCAAGACAATCAATCAAGCAGAAATATAGGTGTTCAATTTAATGCAGTTGAGTTCAAAAAGTCTACTGAAGAGCTAAAATTGCGTTTCGCTAATGAGGAAATGCAAAGAGTTAAGAAAACTATAAGAAAGAAGCGGAAAATGGAACCTAATGGACAAGAACCCTCAGCTCAACATGAAGAAGAGGGTGAAATGCGCTATAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACAGTGACAGCTGAAGAAAGAGAAAGGGCAATTAATTCAGCAAAAGCATTTGAACCGGCTAATCCTTTCTGTCGGGTTGTCCTGCGACCCTCCTATTTATACAGGGGATGCATAATGTATTTGCCATCCTGTTTTGCAGAAAAGCATTTGAATGAGGTTTCAGGGTTCATTAAACTCCAGATCTCTGATGGAAAACAGTGGCCAGTTCGCTGCCTTTACAGAGGAGGTAGAGCGAAGTTGAGCCAAGGGTGGTTTGAATTTTCACTGGAAAATAATTTAGGCGAAGGGGATGTCTGTGTTTTTGAACTTCTTAGTATGAGGGAAGTAGTGTTGAAAGTTACTATATTTCGTGTCGCTGAGGATGCAGGATTGATGAGCCCTCCTCCTATACATCAACATCAAAATGTCAGCCCAACAAAACTGTTGAATACTCCTATGTCACAAACCATAATGCCAGCGAAACTGATTAGAAACTAG 1278 0.4077 MRMLRPCFHKLICPSTLQSRQLIIPDHFLRKFGGELSTVATLTVPDGSVWRVGLKRLGNKFWLLDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLATCEINYQSNTRSSNEGTFFPNQHLNFDDIEDEEDSIEFLDSLPSSVTPGALQNKAFPGTPALQNLFHGSKLNSINWGDGSNSLSSKGANSQDNQSSRNIGVQFNAVEFKKSTEELKLRFANEEMQRVKKTIRKKRKMEPNGQEPSAQHEEEGEMRYRFYESASARKRTVTAEERERAINSAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQISDGKQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLSMREVVLKVTIFRVAEDAGLMSPPPIHQHQNVSPTKLLNTPMSQTIMPAKLIRN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0248 425 CDD B3_DNA 6 98 IPR003340 GO:0003677
Alju04g0248 425 Pfam B3 DNA binding domain 9 97 IPR003340 GO:0003677
Alju04g0248 425 Pfam B3 DNA binding domain 294 384 IPR003340 GO:0003677
Alju04g0248 425 CDD B3_DNA 289 384 IPR003340 GO:0003677
Alju04g0248 425 PANTHER B3 DOMAIN-CONTAINING 6 374 - -
Alju04g0248 425 MobiDBLite consensus disorder prediction 232 252 - -
Alju04g0248 425 Coils Coil 210 237 - -
Alju04g0248 425 SMART B3_2 291 386 IPR003340 GO:0003677
Alju04g0248 425 SMART B3_2 8 100 IPR003340 GO:0003677
Alju04g0248 425 SUPERFAMILY DNA-binding pseudobarrel domain 284 384 IPR015300 -
Alju04g0248 425 Gene3D - 268 388 IPR015300 -
Alju04g0248 425 SUPERFAMILY DNA-binding pseudobarrel domain 6 102 IPR015300 -
Alju04g0248 425 Gene3D - 2 102 IPR015300 -
Alju04g0248 425 MobiDBLite consensus disorder prediction 236 252 - -
Alju04g0248 425 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Alju04g0248 425 ProSiteProfiles B3 DNA-binding domain profile. 291 386 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0248 Alju-ChrAlju04 2057987 2060899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0248 3 390 B3 DNA Binding Superfamily AT3G18990 52.273 4.11e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju04g0248 B3 5.3e-16 CL0405