Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0246 ATGGATAAGCAGAAGAAGAACGTAGGAGCTGATGATGAGTACCCTGAGTTCTTCGACGTATTCTTCCCTAAATACAACTCCCAAAGGATGCGTATTCCCAATGATTTTGCAAAATATTTAGGAGGGAGAGTGTTAAAGAAAGCCATTCTCAAGAGTCGCAAGGGCAAGTTGTGGCATGTCACCGTATGCAACGTTAAAGGTGAGGGAATGTATTTTGAGAACGGCTGGGAGAGATTTACAAAAGAAAATTCACTCAAAGTTGGATACTTTATTACTTTCTTGTTCGATGGAAGTAATACATTCAACTTCAAAATTTATAAAAGAAACCGTTGTGAAATGGCTGAAAACTATGAAGAAGAAAGTGATTCAGTAGAGGTGGTAGAGGAGGAGGATGATACAGATGATGTGGAAGACGAGAAAGAAGAACAAGTCAACAAGAGAAGTGGGAAAAAGAGAAAATGCCTGAGTTGTTGTTCTAGGACGACTAAACGAATCATCAGTAGCATCGAAGATTGTGGAATTGAGGCAGAAACTTATGTTCAGCCAGACAATCCCTTCTTTGTTAATGAACTAGGAGGAAATAGGAAAAACGAGCTGCTTATTCCCAGTTCTATCATACATGACCACTCCCTCAAACTACAAGAACAACAACGAATAACCATTCGGAGATGTTGCAAGCGTCTTCCAAAACATGAAGTGGAAGCACACCATCATCAAGAAGAAAGACAAGAGAAAAGGGAATGGGAAGGGAAAGTGATAAAATCGAAAGATGGAAGATTTTGCATAAGAGAGTGGGCTAAGTTTTGTGGAGGCAATCGGATCACTGACAAAGATGTGTGTCTGTGTGAGTTTCTGGTGGGAGGCGATGGACAAACCGACACATTACAGCCTATCCCAAATGCTTTTTTACGCAGCTTACACAACGGAGTGACACAGAAAACAATACTTGAGAGTAGTGCAGGAAGATTGTGGCATGTTGAGATTTGTAAAATTGAAGGTCAAATGCATTTCTACAATGGTTGGAATAAGTTTACAATAGATGATCCATTAGAGGTTGGGAGCCTCATTACTTTTTCATTTAATGGAAATAATACATTTAAGTTCCAAATCTTTGAACCAAATGGCAATGCAGTGATGGAGGCACATGAAGAGGAAGAATATGAAGAAAGCGATTCTATAGCAAAGGAGGAGGAGGAAGACGAAAACAAACATGATTGA 1218 0.3957 MDKQKKNVGADDEYPEFFDVFFPKYNSQRMRIPNDFAKYLGGRVLKKAILKSRKGKLWHVTVCNVKGEGMYFENGWERFTKENSLKVGYFITFLFDGSNTFNFKIYKRNRCEMAENYEEESDSVEVVEEEDDTDDVEDEKEEQVNKRSGKKRKCLSCCSRTTKRIISSIEDCGIEAETYVQPDNPFFVNELGGNRKNELLIPSSIIHDHSLKLQEQQRITIRRCCKRLPKHEVEAHHHQEERQEKREWEGKVIKSKDGRFCIREWAKFCGGNRITDKDVCLCEFLVGGDGQTDTLQPIPNAFLRSLHNGVTQKTILESSAGRLWHVEICKIEGQMHFYNGWNKFTIDDPLEVGSLITFSFNGNNTFKFQIFEPNGNAVMEAHEEEEYEESDSIAKEEEEDENKHD 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0246 405 SMART B3_2 17 109 IPR003340 GO:0003677
Alju04g0246 405 SMART B3_2 281 374 IPR003340 GO:0003677
Alju04g0246 405 ProSiteProfiles B3 DNA-binding domain profile. 281 374 IPR003340 GO:0003677
Alju04g0246 405 Gene3D - 170 290 IPR015300 -
Alju04g0246 405 CDD B3_DNA 25 107 IPR003340 GO:0003677
Alju04g0246 405 MobiDBLite consensus disorder prediction 119 144 - -
Alju04g0246 405 MobiDBLite consensus disorder prediction 119 139 - -
Alju04g0246 405 PANTHER B3 DOMAIN-CONTAINING 297 396 - -
Alju04g0246 405 CDD B3_DNA 298 371 IPR003340 GO:0003677
Alju04g0246 405 SUPERFAMILY DNA-binding pseudobarrel domain 11 111 IPR015300 -
Alju04g0246 405 Pfam B3 DNA binding domain 298 372 IPR003340 GO:0003677
Alju04g0246 405 Pfam B3 DNA binding domain 19 108 IPR003340 GO:0003677
Alju04g0246 405 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Alju04g0246 405 Gene3D - 291 375 IPR015300 -
Alju04g0246 405 Gene3D - 8 111 IPR015300 -
Alju04g0246 405 MobiDBLite consensus disorder prediction 380 405 - -
Alju04g0246 405 Coils Coil 126 146 - -
Alju04g0246 405 MobiDBLite consensus disorder prediction 382 396 - -
Alju04g0246 405 SUPERFAMILY DNA-binding pseudobarrel domain 297 375 IPR015300 -
Alju04g0246 405 SUPERFAMILY DNA-binding pseudobarrel domain 181 285 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0246 298 394 B3 DNA Binding Superfamily AT3G06160 26.733 1.66e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju04g0246 B3 2.1e-16 CL0405