Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0234 ATGGAGGACTATCAGAACAGCGACGATGATTACCAATACTCCGATCAGGGTTCCCCGAACGACTGCGCATGTGAGGAGGAGCCCGATTTTAAATTGGTCGCTGGCACTGCCAAGGGTCCCACAATTAAGGTCTTGAGGATTTGTAATTACAAAGGAAACACTTCTAACCGCACAGGTTTTGCTAAGATCTCTCTATTCGCATGCATGAAGGATGAGGATTTGTCCACAATAATGGAATTTCTATCAGTGAAAAAGCATCAGGCACGTAGACTTCTTATTTTTCATAGGTGGGATAAGGAGAAATTATCTGCGGAGTTTGTGGAAAAGGGAAAGACGTTACTCTTGGCTGAAGCTGGTGTTAGTGAAGAACACAGTGATTCAGGCTCATTAGTTGCTTCTTCAATAATGTGTGCAATCTGCTTTGAGGTTGTTCCCTGTGATCGAGCAACAAGAATGGACTGTGGTCACTGTTTTTGCAACAGCTGTTGGACAGGATATTTCATTTTCGTGATAAATGAAGGTCAAAGTAAACACATTAGATGCATGGCACACGGATGCAAATATTATTGCAATGAGGATGTTGTGAGTACGCTAGTCAGCCAAAGGAGTTGTGATATGGCAGAGAAATTCGAACATTTTCTTCTTGAGTCCTACATTGAAGACAACAAAAGAGCTAAGTGGTGCCCCAGCACTCCTCCCTGTGGGAATGCAATCTATGTTGAGGATGATGATGGATTATTATATGAGGTGGAATGTTCATGTGGTTTTCAATTCTGTTTTAGCTGTTTGTCGAAACCACATTCCCCTTGTTCTTGTTTGATGAGGGAACGTTGGGCTGAAAAGAGTGCCAATTGGATAAAAAATAACACCCAACCCTGTCCAAATTGCCACAGATTAGTGCACAAGAGTGATGGTTGTGACATTCTTACCTGTATTTGTGGCATGATATTCAGTTGGCTGGGTGGTGGTGACTACGAAGAACAGGAGGAAAATGATGAAGAGGGAAAGCAGGATGAAAGCCGTTTTGTGCGCTATTATCATCGTTTTAAAGCTCATATGAGGAACTGCTCAGATAAAGAATGTAGATTGACAGAGTCTATAGGAAAGAGGGCTTATGTCCTTGGAGACAGAAGCTGGGTAAATGATGGACTCTCCACACTTGTCAGGTCTTGGCGAGTCCTATCATTCTCATATCCATTTTCATTTTATATGTTTAATGATGAAATGTCAGACGAGGAAATGATAAGAAAACAAAACGTATTTGAGCTTTATCAGCAGCAGCTTGAGGAAAATGTTAAGAAGCTCTCTGAAATTTTGGAAATGCCCTTTGAAAGTAATAATGTTCCGGATACAAGGATGCGGGTTATCAATTTGTCAGTAGTTATTGACATGTTTTGTGAGGGAGTGTATGAGTTCATCCAGGAAGACTTATTGGGTTCTCTCTCACTTGGCCCTCACAGGATAGCTCCATACAAGTTATTGAAGCCATGA 1491 0.4152 MEDYQNSDDDYQYSDQGSPNDCACEEEPDFKLVAGTAKGPTIKVLRICNYKGNTSNRTGFAKISLFACMKDEDLSTIMEFLSVKKHQARRLLIFHRWDKEKLSAEFVEKGKTLLLAEAGVSEEHSDSGSLVASSIMCAICFEVVPCDRATRMDCGHCFCNSCWTGYFIFVINEGQSKHIRCMAHGCKYYCNEDVVSTLVSQRSCDMAEKFEHFLLESYIEDNKRAKWCPSTPPCGNAIYVEDDDGLLYEVECSCGFQFCFSCLSKPHSPCSCLMRERWAEKSANWIKNNTQPCPNCHRLVHKSDGCDILTCICGMIFSWLGGGDYEEQEENDEEGKQDESRFVRYYHRFKAHMRNCSDKECRLTESIGKRAYVLGDRSWVNDGLSTLVRSWRVLSFSYPFSFYMFNDEMSDEEMIRKQNVFELYQQQLEENVKKLSEILEMPFESNNVPDTRMRVINLSVVIDMFCEGVYEFIQEDLLGSLSLGPHRIAPYKLLKP 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0234 496 ProSiteProfiles Zinc finger RING-type profile. 137 184 IPR001841 -
Alju04g0234 496 Pfam Ariadne domain 326 492 IPR045840 -
Alju04g0234 496 CDD RING-HC_RBR_TRIAD1 136 187 - -
Alju04g0234 496 Gene3D - 268 478 - -
Alju04g0234 496 Pfam IBR domain, a half RING-finger domain 208 272 IPR002867 GO:0008270
Alju04g0234 496 FunFam RBR-type E3 ubiquitin transferase 131 222 - -
Alju04g0234 496 CDD BRcat_RBR_ANKIB1 215 281 - -
Alju04g0234 496 SMART ibrneu5 208 272 IPR002867 GO:0008270
Alju04g0234 496 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 89 362 IPR031127 GO:0004842|GO:0016567
Alju04g0234 496 SUPERFAMILY RING/U-box 285 328 - -
Alju04g0234 496 ProSiteProfiles TRIAD supradomain profile. 133 343 IPR044066 -
Alju04g0234 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 222 IPR013083 -
Alju04g0234 496 SUPERFAMILY RING/U-box 208 278 - -
Alju04g0234 496 SUPERFAMILY RING/U-box 134 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0234 Alju-ChrAlju04 1983838 1986417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0234 78 492 ARIADNE family AT2G16090 52.183 1.53e-147 429