Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0233 ATGGGGGACTATCAGAGCAGCGATGAAAATTCCCAATCCTCGGATCAGGAGTCCTGGGACGACTGCTCATATGAGGAGGCCGATTCTAAATTGGTCGCTGGCACTGCCAAGGGTCCCACAATTAAGGTTATTACAGAGGAAACACTTTCAATTGCACAGGTTTTTGCTAAGATTTCTCTATTCGCATGCATGAAGGATGAGGTTTTGTCCACAATAATGGATTTGCTATTAGTGGAAAAGCATCAAGCACGTAGACTTCTTATTTTTCATAGGTGGGATAAGGAGAAATTAGCTAGGAAGTTCGTGGAAAAGGGGAAGACATCACTCTTTGCTGAAGTTGGTGTTAGTGAAAAAGAACGCTGTGATTCGGGCTCATCAGTTGCTTCTTCAATGACGTGTGAAATCTGCTTCGAGGTTGTTCCCTGTAATGAAACCACAAGAATGGACTGTGGTCACTGTTTTTGCAACGAATGTTGGATTGAACATTTCATTGTCAAGATAAATGAAGGTCAAAGTAAACACATTAAATGCATGGCACACAAATGCGAATATTATTGCAATGAGGATGTTGTAAGGACGCTACTCAGGGAAGAGAACTGTGATATGGCAGAGAAATTCGAACGTTTTCTTCTCGAGTCCTACATTGAAGACAACAGAAGAGCAAAGTGGTGTCCTAGCACTCCTCACTGTGGGAATGCAATCTGTGTTGAGGATAATGATGTATTCTATGAGGTGGAATGTTCATGTGGTTTTCAATTCTGTTTTAATTGTTTGTCAGAACCACATTCCCCTTGTTCCTGTTTGATGAGTGAACGTTGGGCTGAAAAGTGTACTGGTGCCAATTGGTTAAGAAATAACACACAACCTTGTCCAAAATGCGACAGATTAGTGTACAAAAGTGAAGGTTGTGACTGGGTTACCTGTATTTGTGGCCCAGCATTTAGGTGGCAGGCCGGTGGACGAAAGGAAAAGGCTGAAGAGGCGAATTGGGATGAAAGCCGATTTGCGCGCTATCACGAAGCTCATATGAACTGCTTAGAAAAAGGATTTAGATGGATAGAATCTATAGGAAATATGGTCCTGGGAGACAGTTTCTGGGTAAATGATGGACTCTCCACACTTGTCAGGTCTTGGCGAGTCCTATCATACTCATATCCATTTGCATTCTGTTTGTTTAATGATGGAATGTTAGACATGGAAACGAGAACAAAACACAACTTATTTGAGTATCATCAGGAGAAGCTTCAGGAAAATGTTGAGAAGCTCTCTGAAATTTTTGAACAGCTCTTTGAAAGTGATAAGGTTTCGGATATAAAGATGCAGGTTATCAATTTGTCAGCAGTTATTGACAATTTTTGTGAGCATGTGTATGAGTTCATCCAGGAAGACTTGTTGCGTTCTTTCCCTCACAGGATAGCTCCATACAAGTTATTGAAGCCAGGACCTCAATAA 1452 0.4139 MGDYQSSDENSQSSDQESWDDCSYEEADSKLVAGTAKGPTIKVITEETLSIAQVFAKISLFACMKDEVLSTIMDLLLVEKHQARRLLIFHRWDKEKLARKFVEKGKTSLFAEVGVSEKERCDSGSSVASSMTCEICFEVVPCNETTRMDCGHCFCNECWIEHFIVKINEGQSKHIKCMAHKCEYYCNEDVVRTLLREENCDMAEKFERFLLESYIEDNRRAKWCPSTPHCGNAICVEDNDVFYEVECSCGFQFCFNCLSEPHSPCSCLMSERWAEKCTGANWLRNNTQPCPKCDRLVYKSEGCDWVTCICGPAFRWQAGGRKEKAEEANWDESRFARYHEAHMNCLEKGFRWIESIGNMVLGDSFWVNDGLSTLVRSWRVLSYSYPFAFCLFNDGMLDMETRTKHNLFEYHQEKLQENVEKLSEIFEQLFESDKVSDIKMQVINLSAVIDNFCEHVYEFIQEDLLRSFPHRIAPYKLLKPGPQ 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0233 483 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 44 350 IPR031127 GO:0004842|GO:0016567
Alju04g0233 483 Pfam Ariadne domain 321 476 IPR045840 -
Alju04g0233 483 SUPERFAMILY RING/U-box 130 216 - -
Alju04g0233 483 Gene3D - 263 348 - -
Alju04g0233 483 Gene3D - 349 466 - -
Alju04g0233 483 FunFam RBR-type E3 ubiquitin transferase 127 218 - -
Alju04g0233 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 218 IPR013083 -
Alju04g0233 483 MobiDBLite consensus disorder prediction 1 21 - -
Alju04g0233 483 Pfam IBR domain, a half RING-finger domain 204 267 IPR002867 GO:0008270
Alju04g0233 483 ProSiteProfiles Zinc finger RING-type profile. 133 181 IPR001841 -
Alju04g0233 483 ProSiteProfiles TRIAD supradomain profile. 129 345 IPR044066 -
Alju04g0233 483 SMART ibrneu5 204 267 IPR002867 GO:0008270
Alju04g0233 483 MobiDBLite consensus disorder prediction 1 18 - -
Alju04g0233 483 SUPERFAMILY RING/U-box 204 273 - -
Alju04g0233 483 CDD BRcat_RBR_ANKIB1 211 276 - -
Alju04g0233 483 CDD RING-HC_RBR_TRIAD1 131 182 - -
Alju04g0233 483 SUPERFAMILY RING/U-box 282 320 - -
Alju04g0233 483 Coils Coil 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0233 Alju-ChrAlju04 1977865 1980710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0233 73 476 ARIADNE family AT2G16090 49.781 7.83e-129 381