Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0185 ATGACTTTTCCCTCTACGTTCATGGAGTCACCGGCGGTTGGTTTGCTACCGGCTAAACGCCCTGCAGATGGATTTAATTCAGAGAAACACAAAAGATTAAATGTTGTGGACTATAGCAATCCATATGCAGTTGCAGACTTGATTGATGGCCTGAACCACGGAAACTTTGGTAGTGTCACCAAGGATATAGAGTCCCTTATAGCTCAAAAGATGCAAACATTGAGCCCTATATTTGCAAAAGATCCTGCACTTCTACAGTTTGCGAAAGTGGGAATGAATCGCAATGAAGAAGCTGCTAAGAAAATCATAGATTTGGAGGATAATATCATTACAAAGATTGCTCCAAAAGCATCATCAACTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAGGAAACCTTTTCTGCCATTTCAAGAAGTTATTCTGCCAAAATCTGTTGTCCCGTCTGCTACAAAGGACATAGTTAAGTACCATGTTCCCAAAGTACATAATCGTCCTACCAAGGGTCATGCTGGAAGTCTAGATGTAAAATCTGAACCTTTTCTCGATGGCAAAGACAGCATTGTAGAAGATAAAGGTGCTTTTATTGGTGTTCAAGAGGAAGACAATCCAGAGGCTGATTCAAAGGATGATGGGCTCGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTGCTATGGATTCTCCACATGATGAAGCTGAAAAGGGTGGGGGTGACTGTGATCACTCTTATGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTCATTGACAAAGGAATCGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAGAGTACAAGAACTTACGCGGCTGATTCATGGAATGCCAAAGAGAGAGCAGTGCCTGAGGTATCAGGACTTCAATTTGGTGAGGGTGGTCTGGTGATAACTGAAATCTCTGCTCACCCTAGGCATATGAAGCAAATGAAAGCTCATCAACTTGAAGGATTTAATTTTCTTGTCCGGAACCTTGCAGGTGACAATCCTGGTGGTTGCATCTTGGCCCATGCTCCTGGTTCTGGGAAAACATTCATGATAATTAGTTTCATGCAAAGTTTTCTGGGCAAGTATCCTGATGCTCGACCCCTTGTGGTTCTTCCCAAGGGAATATTGGCCACTTGGAAAAAGGAGTTTCAGATATGGCAAGTGGAGGATATTCCACTCCTTGATTTTTACTCTGCTAAGGCTGACAGTCGATCTCAGCAACTTGAAGTTTTAAAACAGTGGGTAGAGCAGAAGAGTATCCTTTTCCTAGGATACAAACAATTCTCTTCAATTGTCTGTGATACTGATACTGGCCACGCATCGACGTCTTGCCAAAGGATATTACTTGGGGCTCCTTCTATTCTAATCTTAGATGAGGGACACACACCGAGGAATGACAATACTGACATAGTTCAGTCCCTTAACAAAGTTCAAACTCCTCGAAAAGTTGTGCTGTCTGGGACGTTATATCAAAATCATGTCAAAGAGGTGTTTAACATTTTAAACATTGTGCGTCCAAATTTTCTCCGTTCACAGACATCTCGACCTATTGTCAGGCGCATTAAGAGTAGAGTACATGTACCAGGTGTGAAGGATTTCTGTGACTTGGTCGAGAACACTTTGCAGAAGGACCCTGATTTCAAAAGGAAAGTGGCTGTCATTCAAGATTTGCGTGAGATGACAAGCCAGGTACTTCATTACTACAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTGGATTTTGCAGTTGTACTCAATCTTTCTCCCCGACAGAAGCAAGAAGTCCAGAAATTAAAGTACTTATCCAGAAAGTTTAAGATAATTTCTGTAGGAAGTGCTGTTTATCTTCACCCTAGATTAAAGCCCTTGGCAGAAAATTGTGCTGAGAATTCTGCTATATCTGATCACGTGATGGATGAGAAAATAGAGGGTCTAGATATGGATGATGGGGTAAAATCGAAGTTCTTTCTTAAAATTCTGAGCCTATGTGAATCAAGCGGTGAGAAGCTTTTAGTTTTCAGCCAATATCTCTTGCCTTTGAAGTATTTGGAACGATTGACCGTGAAAAGGAAGGGATGGAGTCCAGGGAAAGAGATATTTGTTATATCAGGCGAATCAAGCTCTGAACATAGAGAATGGGCGATGGATCAGTTCAACAATTCGCCAAATGCAAAAATATTCTTTGGCTCAATCAAGGCATGTGGAGAAGGCATATCTCTGGTCGGTGCATCACGCATAATTATTCTGGATGTTCATCTAAATCCATCAGTTACACGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAGACCAAGAAAGTCTATGCATATCGGTTGATCGCTGCTGACTCTCCTGAACAGGAAGACCATGATACTTGTTTCAAGAAGGAATTAATATCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTTTTCGTGATTTTGAAGTGGAGACGGTTGATGTGCAAGAATGTGGTGATGTCTTTCTGCAGAGTCCATTGATAAGGGATTATATAAAAGTTCTGCATAGAAGGCCTGGGCACTCTGGTGAGCTCGATGGACGGGGTTAA 2622 0.4146 MTFPSTFMESPAVGLLPAKRPADGFNSEKHKRLNVVDYSNPYAVADLIDGLNHGNFGSVTKDIESLIAQKMQTLSPIFAKDPALLQFAKVGMNRNEEAAKKIIDLEDNIITKIAPKASSTVVIIDSDEEDDRDRKPFLPFQEVILPKSVVPSATKDIVKYHVPKVHNRPTKGHAGSLDVKSEPFLDGKDSIVEDKGAFIGVQEEDNPEADSKDDGLEDIWREMSMAIECSKDVAMDSPHDEAEKGGGDCDHSYVLKDDLGYVCRVCGVIDKGIETIFEFQYKVKKSTRTYAADSWNAKERAVPEVSGLQFGEGGLVITEISAHPRHMKQMKAHQLEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPDARPLVVLPKGILATWKKEFQIWQVEDIPLLDFYSAKADSRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDTDTGHASTSCQRILLGAPSILILDEGHTPRNDNTDIVQSLNKVQTPRKVVLSGTLYQNHVKEVFNILNIVRPNFLRSQTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFAVVLNLSPRQKQEVQKLKYLSRKFKIISVGSAVYLHPRLKPLAENCAENSAISDHVMDEKIEGLDMDDGVKSKFFLKILSLCESSGEKLLVFSQYLLPLKYLERLTVKRKGWSPGKEIFVISGESSSEHREWAMDQFNNSPNAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVYAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFRDFEVETVDVQECGDVFLQSPLIRDYIKVLHRRPGHSGELDGRG 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0185 873 Pfam Helicase conserved C-terminal domain 674 785 IPR001650 -
Alju04g0185 873 Pfam SNF2-related domain 350 611 IPR000330 GO:0005524|GO:0140658
Alju04g0185 873 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 840 IPR001650 -
Alju04g0185 873 Gene3D - 593 838 IPR027417 -
Alju04g0185 873 SMART helicmild6 698 786 IPR001650 -
Alju04g0185 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 530 IPR027417 -
Alju04g0185 873 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 202 858 IPR044567 GO:0080188
Alju04g0185 873 CDD SF2_C_SNF 657 797 - -
Alju04g0185 873 SMART ultradead3 326 536 IPR014001 -
Alju04g0185 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 824 IPR027417 -
Alju04g0185 873 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 344 523 IPR014001 -
Alju04g0185 873 Gene3D - 309 543 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0185 Alju-ChrAlju04 1550720 1555987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0185 683 804 RAD5 or RAD16-like Gene Family AT5G43530 36.066 1.26e-14 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju04g0185 SNF2_N 6.4e-20 CL0023