Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0156 ATGGGTAAACCAAAGGCTCCCAGAAGAACCCTAGAGTCATACACAGTCAAACACATAAGCAAAACCGTTAGAGCTGGCGACTGCGTTCTTATGCGGCCCTCTGAGCCGTCGAAGCCGTCCTACGTGGCTAGGATCGATCGGATCGAGGCCGACTCTCGAGGCGCCAACGTTAAGGTTCACGTCCGTTGGTACTATCGGCCGGAGGAGTCTATCGGTGGCCGTCGCCAATTCCACGGTTCTAAAGAGGTTTTCCTCTCTGATCACTTTGATGTTCAGAGCGCCGACACGATTGAAGGCAAGTGTACGGTTCATAGTTTTAAGGGCTATACGAAGCTCGATGCTGTCGGAAATGACGATTTCTTCTGCCGTTTCGAATATAATTCCGCCACCGGAGCATTCAATCCAGATAGAGTCGCCGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTTCAGTGTGAAGTCTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTTGAGGAAGCCAAAAGACTTGACCACTTCTTCTGTGAAAGTTGTTCTGCGGAAGATCAAAATAAGTTACCAAATTCGCATTCTGCGAGACTTTCAGATACGAAGGTGGATACAAAACGCCGTCGAAGGTGA 648 0.4846 MGKPKAPRRTLESYTVKHISKTVRAGDCVLMRPSEPSKPSYVARIDRIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKGYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEVCSDWFHPACIDMTVEEAKRLDHFFCESCSAEDQNKLPNSHSARLSDTKVDTKRRRR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0156 215 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Alju04g0156 215 SUPERFAMILY FYVE/PHD zinc finger 131 191 IPR011011 -
Alju04g0156 215 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Alju04g0156 215 MobiDBLite consensus disorder prediction 191 215 - -
Alju04g0156 215 Pfam PHD-finger 141 189 IPR019787 -
Alju04g0156 215 Gene3D - 2 133 IPR043151 -
Alju04g0156 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 205 IPR013083 -
Alju04g0156 215 SMART PHD_3 141 188 IPR001965 -
Alju04g0156 215 SMART BAH_4 21 137 IPR001025 GO:0003682
Alju04g0156 215 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Alju04g0156 215 PANTHER OS08G0421900 PROTEIN 5 202 - -
Alju04g0156 215 Pfam BAH domain 22 136 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0156 Alju-ChrAlju04 1335995 1339744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0156 31 127 Core DNA Replication Machinery Family AT4G12620 29.897 5.90e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju04g0156 BAH 8.3e-22 No_clan