Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju04g0150 | ATGAGTTCAGAACGCCTTTGGAGCTCCATTTCCTTTCTCTCTCCACTGGTGTGCTTGTTGCTTTCACCAATAGTCATGGCTTCCGACTCTTCTCCGCCGAATTTCAACAACGGTCCTTCATCTCCCGACGATTCATTTTCCAGCCCAATCGGCAACACATTATCCTCTCCCGGAGATGCTGCTCGCCACAGAGGGCGTCGGCGTTCATCGACACCGGCTGCGTTCGCGACTCCTCCGTCTAATCGAACCCGATTTGCCTCCTCCGATGCTACCCCATCTCCATCGAGGACCAGGCAAAGGGGAGGTGGTCGGAGGGCGTCTATGTCCACCCCTGTTGCAGCCACACCCACATCCACTGATGACGCGCCCATGTCATCAGAAGGCGGAGAGGGTTACAATGCAGATGATATCAGGCCTACCTTCGTCTGGGGTACTAATATAAGCGTCGAAGACGTAAATGAAGCGATTCAGAGGTTTTTAAAGCACTTCAGAGAGCAGTCATCTCAAAGCGATGGGCTGCATATGGAGGGGAAATATGAGACGGCTATCAAACAAGTCATTGAAATTGAGGGAGATTCACTAGACGTCGATGCACACGATGTATTTGATTATGATCCAGACTTGTACACAAAAATGGTCAGATACCCGCTCGAGGTTCTTGCAATTTTTGATTTGGTTCTGATGAATATGGTCAGTAGAATCAACCCGTTGTTCGAAAAGCACATTCAAACTCGAATTTTTAATCTTAAAACCTCGACTTCAATGAGAAATTTGAATCCATCTGATATTGAGAGGATGGTATCATTGAAGGGAATGATTATTCGATGTAGCTCCATTATACCAGAAATCAGGGAAGCTATATTTAGATGTCTCGTGTGTGGATGCTGCTCAGAACCGGTTGCCGTAGAGAGAGGGCGAATAAGTGAGCCTACTAAATGTCCAAGGGAAGAGTGTCAAGCGAAAAATTCCATGACACTGGTTCACAACCGATGCAGTTTCACAGATAAGCAAATTGTGAGGCTCCAGGAGACACCTGATGAGATACCTGAAGGGGGAACACCACACACTGTAAGCTTGCTGATGCATGACAAGCTGGTAGATGCCGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATATAGGGCTATGAGTGTCAGGGTTGGACCAACTCAAAGAACTGTTAAATCACTGTTCAAGACTTTCATTGACTGTCTTCATATTAAGAAGACTGATAAGTCAAGAATGCTGTCAGAGGATGCAATGGACGTTGAAACTAGCCTGGGCAACCGAAATACAGAAGAGATTCATTTTGATGAAAAAAAGGTGGCTCAACTGAAAGAGCTCTCAAAACAGCCAGATATATATGAAAGGCTGACAAAGTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGCCTTCTTTGCCAGCTTTTTGGTGGAAATGCTTTGAAGTTGGCATCTGGCGCTAACTTCCGTGGTGATCTTAATATCTTACTAGTTGGTGATCCTGGAACCAGCAAGTCCCAGCTACTCCAATACATACATAAACTTTCTCCACGTGGCATTTACACAAGTGGAAGGGGTAGCTCTGCTGTTGGACTGACTGCTTATGTTACCAAAGATCCTGAAACAGGCGAAACGGTTCTCGAGAGTGGCGCTCTAGTTTTAAGTGACAGAGGCATCTGCTGTATAGATGAATTTGACAAAATGTCTGAGAATGCCAGGAGCATGTTACATGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAAGCAGGTATTATTGCCTCCCTCAATGCCAGGACTTCAGTGTTGGCTTGTGCGAATCCTAGTGGGTCGCGATATAACCCCCGCTTGTCTGTCATTGACAACATACAACTTCCTCCTACACTTCTGTCCAGGTTCGATTTGATCTACTTGATTCTTGACAAGGCTGATGAACAGACAGATAGACGACTTGCCAAGCATATTGTTTCCTTGCACTTTGAGAATCCTGAGAGCTTAGAGCAAGATGTGTTGGATCTTCATACGTTAACTGCTTATGTGAGTTATGCTCGGAAGCATATACACCCACAACTATCGGATGAAGCTGCTGAAGAACTGACTAGAGGTTATGTTGAGATAAGAAGGAGAGGAAATTTTCCAGGGAGCAGCAAGAAGGTGATTACAGCAACACCAAGGCAGATTGAGAGTCTAATACGGCTTAGCGAAGCCTTGGCTCGGATTCGCTTCTCAGAATGGGTGGAAAAGCGGGATGTCATGGAGGCTTTTCGGCTTCTAGAAGTTGCAATGCAGCAGTCTGCCACTGATCACTCTACCGGAACCATTGACATGGATCTTATTACTACTGGAGTTTCTGCAAGTGAAAGGATGAGACGAGAAAGTGTGGTACAAGCAACTCGCAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCAATGCGATTGTTGGAGTTACTGGAAGAGTTGAAGAAACAGAGCGCCAGTGAACTCCACCTCAGTGATGTAAGAAATGCAGTTGCTACTTTGGCCAGTGAAGGATTTGTTGCTCTGCATGGTGACAGTATAAAAAGATCGTGA | 2595 | 0.4563 | MSSERLWSSISFLSPLVCLLLSPIVMASDSSPPNFNNGPSSPDDSFSSPIGNTLSSPGDAARHRGRRRSSTPAAFATPPSNRTRFASSDATPSPSRTRQRGGGRRASMSTPVAATPTSTDDAPMSSEGGEGYNADDIRPTFVWGTNISVEDVNEAIQRFLKHFREQSSQSDGLHMEGKYETAIKQVIEIEGDSLDVDAHDVFDYDPDLYTKMVRYPLEVLAIFDLVLMNMVSRINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGCCSEPVAVERGRISEPTKCPREECQAKNSMTLVHNRCSFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTFIDCLHIKKTDKSRMLSEDAMDVETSLGNRNTEEIHFDEKKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDLNILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIQLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPESLEQDVLDLHTLTAYVSYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESVVQATRNIIMEKMQIGGPSMRLLELLEELKKQSASELHLSDVRNAVATLASEGFVALHGDSIKRS | 864 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju04g0150 | 864 | Gene3D | - | 146 | 249 | - | - | |
| Alju04g0150 | 864 | MobiDBLite | consensus disorder prediction | 32 | 55 | - | - | |
| Alju04g0150 | 864 | SUPERFAMILY | Nucleic acid-binding proteins | 174 | 405 | IPR012340 | - | |
| Alju04g0150 | 864 | FunFam | DNA helicase | 282 | 334 | - | - | |
| Alju04g0150 | 864 | MobiDBLite | consensus disorder prediction | 73 | 124 | - | - | |
| Alju04g0150 | 864 | Gene3D | - | 282 | 334 | - | - | |
| Alju04g0150 | 864 | SMART | mcm | 251 | 769 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Alju04g0150 | 864 | Pfam | MCM OB domain | 255 | 384 | IPR033762 | - | |
| Alju04g0150 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 584 | 597 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Alju04g0150 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 635 | 643 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Alju04g0150 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 608 | 620 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Alju04g0150 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 496 | 511 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Alju04g0150 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 556 | 570 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Alju04g0150 | 864 | Pfam | MCM N-terminal domain | 154 | 251 | IPR027925 | - | |
| Alju04g0150 | 864 | Pfam | MCM AAA-lid domain | 681 | 767 | IPR041562 | - | |
| Alju04g0150 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 617 | 634 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Alju04g0150 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 769 | 778 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Alju04g0150 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 277 | 290 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Alju04g0150 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 328 | 340 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Alju04g0150 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 471 | 482 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Alju04g0150 | 864 | FunFam | DNA helicase | 436 | 774 | - | - | |
| Alju04g0150 | 864 | MobiDBLite | consensus disorder prediction | 32 | 135 | - | - | |
| Alju04g0150 | 864 | Gene3D | - | 433 | 773 | IPR027417 | - | |
| Alju04g0150 | 864 | ProSiteProfiles | MCM family domain profile. | 455 | 661 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Alju04g0150 | 864 | Gene3D | - | 255 | 394 | IPR012340 | - | |
| Alju04g0150 | 864 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 466 | 781 | IPR027417 | - | |
| Alju04g0150 | 864 | Gene3D | - | 774 | 856 | IPR036388 | - | |
| Alju04g0150 | 864 | Pfam | MCM P-loop domain | 443 | 665 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Alju04g0150 | 864 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 153 | 827 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Alju04g0150 | 864 | ProSitePatterns | MCM family signature. | 564 | 572 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Alju04g0150 | 864 | CDD | MCM4 | 458 | 767 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju04g0150 | Alju-ChrAlju04 | 1271248 | 1277927 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju04g0150 | 26 | 863 | Core DNA Replication Machinery Family | AT2G16440 | 75.854 | 0.0 | 1282 |