Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0143 ATGAAGATACTTTGTGATGTGTGTAACAGAGTTGAGGCCTCTCTCTTCTGTCCCTCCGACGAAGCTGCTCTCTGCTACGCCTGTGATCGTACCATCCACCATGCCAACAAGCTCTCTCGCAAACACTCTCGCTTCTCTCTCCACTATCCTTCCTCTAATTCATCTCCTCTCTGCGATATCTGTCGAGAAAGGAGGGCGTATCTGTTTTGCCAAGAAGACAGAGCAATACTGTGCAGAGAATGTGACGTTTCTATTCATATAGCCAGCGAGCATACTGGGAAACATAACAGGTTTCTTCTAACTGGTGTGAAGCTCTGTGCTTCTATCTCAAGCAATAATGACTCACAATCTAACATGAAGAGACACAAGTCATCAGTTTCAAGTGAGAATGCGAGTTCTTCAATGGTGAATAGTTCCTTGTTGGCCTCAGGGACTGGTTTTTGCCACGTTGAAGATCAGTGTATAATTAGTGATACCAGTTTATCAGTTTCAACAAGCAGCATTTCTGAATACTTGATAGAGAAGATACCTGGTTATTGCTTTGAAGATCTTCTTGATGCTTCTTCTTTCCCTCCACTTAATGGTTTCTCTTAA 594 0.4293 MKILCDVCNRVEASLFCPSDEAALCYACDRTIHHANKLSRKHSRFSLHYPSSNSSPLCDICRERRAYLFCQEDRAILCRECDVSIHIASEHTGKHNRFLLTGVKLCASISSNNDSQSNMKRHKSSVSSENASSSMVNSSLLASGTGFCHVEDQCIISDTSLSVSTSSISEYLIEKIPGYCFEDLLDASSFPPLNGFS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0143 197 SMART bboxneu5 4 47 IPR000315 GO:0008270
Alju04g0143 197 SMART bboxneu5 53 100 IPR000315 GO:0008270
Alju04g0143 197 CDD Bbox1_BBX-like 57 100 - -
Alju04g0143 197 Gene3D Classic Zinc Finger 1 100 - -
Alju04g0143 197 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Alju04g0143 197 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Alju04g0143 197 FunFam B-box zinc finger protein 21 1 98 - -
Alju04g0143 197 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Alju04g0143 197 CDD Bbox1_BBX-like 4 47 - -
Alju04g0143 197 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 188 - -
Alju04g0143 197 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Alju04g0143 197 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0143 Alju-ChrAlju04 1234072 1235219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0143 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 50.242 8.52e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Alju04g0143 zf-B_box 2.3e-08 No_clan