Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0135 ATGACAAACCCTGCCGGGGATCCTCCCTTGCCCTCGCGGTGCATCCCGCCGCTGACGTCGCCTGCTACCGTCGAAGACATGCCACTCGCCCGGAGAGATGACGCTGATGAAGCAAAGACCCTCCTGCACAGTGACGAAGCGGAAGAGAAACCATCCTATCCTTCTGTTCCACCTGCTTCCAGGGAAGTGTCAGAGGAAATCAATGTAGCTGACATTGCTGTGGAGACCAAGAAGTTGGAGGAGGAGGCAGGCGAGGCTGTCATGTCAAATGAAAATGAGGAAGCGGAGAAAGTAGTTATGGGAATGGAGACATCTGACTTGTATGCAGCTTGCAGCTTAGGCGAGACAGCTGAAGCAGCGGAGGCATGGAAAGTGGAAGAGGAAACCCATGTAGCTATCATTGCTGAGGACATTACAAAGGCAGAAGATGAAGCCAATGTAGCAAACACTGTCGAGGACATTGCAAAGGTGGAAGAGGAAACTGATGTAGCTAACATTGCTGAGGATAATAAGAAGGTGGAACAGGAAACTGATGTTGCTAACATGGCTGACGATAATACAAAGGAGGAGGAGGAAACTGATGTAGCTAACATTGTTGAGGATAATAAGAAGGTGGAAGAGGAAACTGATGTTGCTAACATGGCTGACGATAATACAAAGGAGGATGAGGAAACTAATGTAGCTAACATCGATGAGGGCATTACAAAGGTGGAAGAGGATGCAGATGTAGCTGACATTGTTGAAGGGGAGGTTGATGCTGCTGCCATGTCATATGAGAAAGAGGAAGCAGAAAATGTTGTAGCTAGGATGGAGCCAGCGGACGCACATGTGGCTTATTCCCTAGGTGAGACAACTGAAGCGTTGGGTATCAGGGAGGTGGATGAAGAGGCAGATGAAGAGGGCATGCCAGATGAGAATGAGGAAGCTGAGAAAGTAGCAGAGGGGATGGAGATGGAAGATGGGTATGTAGCTTCCACCCGTGGCGAGACAACTGAAGCAGGTGGAGTTGTCATGGAGGCTGAAGATAAGGAGGAGGCAGCAGAGGTGTTGAATGGGGTTGGCATAGTGGAAGGTACAACTGACACAGAAGAGGATGCTGCTGGAGCTGGTGGAAGGGAGGAGGCCCTAGAGGCAGAAGAGTTGGAGGTAGCCAATGAAGCAGATTTGATGGAAGAGGAAGTAGATGTTGCTGAAGTGGCAGAATATACGGGGGGTGCTGAGTTGACTGAAGAGATGGAGATGGCTGATGAGCAAGGTAGAAGTGTCAGCAGTGGCAAGAGGAAGCGTGGGAAGAACTCAAAGTCTGCGGGGAGAGTTCCAGTTAGAAAAAAGGTGGAAGAGGATGTTTGTTTCATATGCTTTGATGGGGGTGAGCTTGTGCTTTGTGATCGCAGGGGATGCCCAAAAGCTTACCATCCTACATGTATTAATCGTGATGATGCTTTCTTTCGAGCAAAGGGTAAATGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGGGAAGAATTCTTACTACATGTGCTATACCTGTACGTTCTCTCTGTGCAAGGGGTGCATCAAAGATGCTGTCATCTTGTGTGTTAGGGGAAAGAATGGCTTTTGTGAGACATGCATGAGGACTGTAATGCTGATTGAACAGAATGAACTAGGGAGCAAGGACAAGGGACAAGTTGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGACTACTACACAGATCTGAAAGGGAAGCTATCTTTAACATATGATGAGCTTGCTCAAGCTAAAAACCCGTGGAAGGGATCTGATATCCATCTTACCAGGCAAGAATCACCTGATGAGCTCTATGAGGCTAATAATGACGGGGGATCACATTCAGATAGCTCTTCGGAAAATGTAGAAAGAAGTAGTGTTAAAAGAAGAAAGGCCAATAAACGATTGAAGTCCCGTTCCAAGGAGGTGAATTCACATAGCACAATGACATTGATTGGTGACAAAGGGCCATCTGCAGATGAGAGGTCTGATTGGGCATCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGTGACAAATCTATTATGTCTCAGTTTGATGTGCAGGCTCTTCTGCTAGAGTATATTAAAAGAAACAAGCTCCGTGATCCTCGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGTCATTTTGAAATGTTAAAGCTTCTTGAATCCCACTTCCTATTAAAAGAAGATTCCCAGACTGAGGATCAACAGGGGAGTGTTGTTGATACTGAAGTTAACCATTTGGAAGGTGATGGCAATATTGATTCCTATCCAAAGACTGGAAAAGACAAGAGACGTAAAACACGAAAAAAAAGTGATGAAAGAGGACTTCAATCCAATATTGATGATTACGCAGCTATTGATAATCATAATATTAATTTAATTTATCTAAGACGCAACTTGATGGAAGAATTACTTGAAGATACAGATAAGTTTCATGATAAAGTTGTTGGGTCTTTTGTGAGAATAAGGATCTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGAACATGCAAAGCAGCTGAGCCATATAAAGTTGGTAAAAGGATGACAGATACCCTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGACTACGCCAGAGTATAAAGTGTGGGTTGATAAATCGGCTGACTGTGGGTGACATTCAAGACAAAGCAATGACACTGCAAGCAGTCAGAGTAAAAGATTGGTTAGAAACAGAGATAGTGAGGCTAAGTCACCTCCGTGATAGAGCCAGTGAGAAAGGACGGAGAAAAGAATATCCTTGGGTCGTGAACTTATTTATTTTTAAAGAGTGTGTGGAGAAGTTGCAGCTTTTAAAAACACCTGAGGAACGTCAGCGAAGATTGGAGGAAATTCCAGAAATACATGCAGACCCAAACATGGATCCAAGTTATGAGTCTGAGGAGGAAGAAGAAGAAACTGATCCTAAACGACCAGAGAGTTACATGAGACCCAGAGGAATGGCATTTGAACGAAGGGGGAGAGAAACGGTTTCTCCTAGAACAGGTGGTTCTAATTCAAATGATTCATGGAGTGGAGCAAGGAACTATTCTAATATTAATCGTGAGCTAAGCAGGAATTTATCTAATAAGGGACTCTCAGTTAAATTTGATGACGTGTCTAATGCATCTGAGGTATCGAATGATAGTCAAATCCTCTGGGGGAGAGAGAGGGAAACACAACTATCTAACAGCTGGGAGGGACAAAAACTATATTCAAGCTTAGAGAGTAGTGGCAAAAGTATCCAGCCTGTGGAAGCATCCGAGTCTCTTTCTACTACTGTGTCCAATGCTTCTGCTGTATCATCAACTGGCATAGCACCGCCTGCTGTGAAAATTAATGAATCAGAAAAGATTTGGCATTACAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCAATGGCACAGTTACGTAAATGGAATAACACTGGATATTTTCCTGTTGATTTGAGAATTTGGAGAGCCACTGAGATACAAGATGAGTCTATACTCTTAACTAATGCCTTGGCTGGAAACTTTTCTAAGGAGTCATCTGCAGTGGATAAAACTTTTCCGAAGGCTCAGGTGGTGCATAATTTGAATTATGCAGCTTCACACTCCGGGAAGCTTCATTTGCCTGCACAAGGTGTAGATACTCAAGTTGGAGGAAGATCGACATTTGATCAGAGCAGTGAGTCCTATAATTCACATAATGCTATCGGTTCTCTGGGCCAAACTACTGGAGGAAGTTGGAGATTTGAAGATAATAATTCTGTTGCAAGTAGGCCTTCTCCAATGGCAGTTGAGATTCCCAAGATCCCTTCTAATGTACGGGGGCCTGATGCTGGTATTACAATTGAGTCAGTGAATCTTCCTTCACCTACTCCTCAGACTACCTCTTATGGGGCTAAAGCGCAGGCTTTTGAAAATAAATGGTCACCAACTCCTGTCCACCCTGCTGGTTCTCTTGTAGGGAGTCCTTTTCCTGCAGAGAAAGTGATGCAAAGTGCTGAAAGTGGTTCAAGTTCACAACAAGCTCAGATTCCAGCCCCAAATCCTGGTATTCCTCTTGGTCATCCTCAAGCAACAATGGTGGCACCTATTACAGCAGATGCCTCGAGAAATACTGGCGACTGGAATTCTCATGCTGAAGCTCAAGGTTGGGGATCTGGATTGGTTCAGAAACCTGAAATGGCTGGTTCAATTCAGATACGAGGGGGTGAACCACAGGCCTGGGGAGGTGTCCATTCAAGGGTAGAATCAAATAATGCTGCTGCTATGCCTGCCCAACCCCCGCCAACTCATGGCCACTGGGCAGATGCTTCATCTATCCAGAATGCTGCCTCATTTAACACTGGAAATCCAATGGGGAATTTACCCATGCCAGGCATTCAAGACTTGAGACCACCAACTTCAAGTAATCAAGCCAACATTCCTGCTGCTTTGCCACCCAACATGCCTTGGGGCATGACTGTTGCAGAAAATCAAAATGCTAGTTGGGGGGTAATGCCTGGAAATCCAAATCTAAATTGGGGTGGACCTCCAGCTGCCAATATGAACATGAATTGGATGCCTGGCCAGGGTCCAGCACCAGGAAACGCAAATCCAGGATGGGCGCCTCCCAGTCAGGGACCATCTTCAGTAATCCCTAGCGGTTGGGTTCCACCTGGTCAAGGCCATCCTAATGCTAATGGAGGTTGGGTTGTGCCGGGTCAAGGTCCGGCACCTGTTGGTGCTAATCCTGGTTGGGTTGCACCGGCCGGGGGCCAAGGCATGTGGGGAAATGAACAAAATCATAATGGAGACAGGTTTTCGAACCATAGGGATCGTGGTCCTCATGGTGAATCAGGTTATGGAGGAGATAAAACATGGAACAGGCAGTCTTCATTTGGTGGTGGAGGCCGGGGAGGAGGTTCTTCAGGGCCTCCTTTTGCGCAGAGAGGAGTGTGCAAGTTCCACGAGAGTGGACACTGCAAGAAAGGAGCTTTTTGTGACTATCTGCACACCTGA 5133 0.4533 MTNPAGDPPLPSRCIPPLTSPATVEDMPLARRDDADEAKTLLHSDEAEEKPSYPSVPPASREVSEEINVADIAVETKKLEEEAGEAVMSNENEEAEKVVMGMETSDLYAACSLGETAEAAEAWKVEEETHVAIIAEDITKAEDEANVANTVEDIAKVEEETDVANIAEDNKKVEQETDVANMADDNTKEEEETDVANIVEDNKKVEEETDVANMADDNTKEDEETNVANIDEGITKVEEDADVADIVEGEVDAAAMSYEKEEAENVVARMEPADAHVAYSLGETTEALGIREVDEEADEEGMPDENEEAEKVAEGMEMEDGYVASTRGETTEAGGVVMEAEDKEEAAEVLNGVGIVEGTTDTEEDAAGAGGREEALEAEELEVANEADLMEEEVDVAEVAEYTGGAELTEEMEMADEQGRSVSSGKRKRGKNSKSAGRVPVRKKVEEDVCFICFDGGELVLCDRRGCPKAYHPTCINRDDAFFRAKGKWNCGWHLCSNCGKNSYYMCYTCTFSLCKGCIKDAVILCVRGKNGFCETCMRTVMLIEQNELGSKDKGQVDFDDKSSWEYLFKDYYTDLKGKLSLTYDELAQAKNPWKGSDIHLTRQESPDELYEANNDGGSHSDSSSENVERSSVKRRKANKRLKSRSKEVNSHSTMTLIGDKGPSADERSDWASKELLEFVMHMRNGDKSIMSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDQQGSVVDTEVNHLEGDGNIDSYPKTGKDKRRKTRKKSDERGLQSNIDDYAAIDNHNINLIYLRRNLMEELLEDTDKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAMTLQAVRVKDWLETEIVRLSHLRDRASEKGRRKEYPWVVNLFIFKECVEKLQLLKTPEERQRRLEEIPEIHADPNMDPSYESEEEEEETDPKRPESYMRPRGMAFERRGRETVSPRTGGSNSNDSWSGARNYSNINRELSRNLSNKGLSVKFDDVSNASEVSNDSQILWGRERETQLSNSWEGQKLYSSLESSGKSIQPVEASESLSTTVSNASAVSSTGIAPPAVKINESEKIWHYKDPSGKVQGPFSMAQLRKWNNTGYFPVDLRIWRATEIQDESILLTNALAGNFSKESSAVDKTFPKAQVVHNLNYAASHSGKLHLPAQGVDTQVGGRSTFDQSSESYNSHNAIGSLGQTTGGSWRFEDNNSVASRPSPMAVEIPKIPSNVRGPDAGITIESVNLPSPTPQTTSYGAKAQAFENKWSPTPVHPAGSLVGSPFPAEKVMQSAESGSSSQQAQIPAPNPGIPLGHPQATMVAPITADASRNTGDWNSHAEAQGWGSGLVQKPEMAGSIQIRGGEPQAWGGVHSRVESNNAAAMPAQPPPTHGHWADASSIQNAASFNTGNPMGNLPMPGIQDLRPPTSSNQANIPAALPPNMPWGMTVAENQNASWGVMPGNPNLNWGGPPAANMNMNWMPGQGPAPGNANPGWAPPSQGPSSVIPSGWVPPGQGHPNANGGWVVPGQGPAPVGANPGWVAPAGGQGMWGNEQNHNGDRFSNHRDRGPHGESGYGGDKTWNRQSSFGGGGRGGGSSGPPFAQRGVCKFHESGHCKKGAFCDYLHT 1710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0135 1710 ProSiteProfiles Zinc finger PHD-type profile. 447 513 IPR019787 -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 405 439 - -
Alju04g0135 1710 ProSiteProfiles Plus3 domain profile. 807 940 IPR004343 GO:0003677
Alju04g0135 1710 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 338 1710 - -
Alju04g0135 1710 ProSitePatterns Zinc finger PHD-type signature. 450 510 IPR019786 -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 1630 1682 - -
Alju04g0135 1710 Coils Coil 373 393 - -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 1260 1275 - -
Alju04g0135 1710 SUPERFAMILY GYF domain 1154 1216 IPR035445 -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 1642 1657 - -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 996 1010 - -
Alju04g0135 1710 ProSiteProfiles SWIB/MDM2 domain profile. 665 748 IPR003121 -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 609 667 - -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 27 50 - -
Alju04g0135 1710 FunFam Zinc finger CCCH domain-containing protein 19 440 539 - -
Alju04g0135 1710 SUPERFAMILY FYVE/PHD zinc finger 433 495 IPR011011 -
Alju04g0135 1710 ProSiteProfiles GYF domain profile. 1164 1218 IPR003169 GO:0005515
Alju04g0135 1710 Gene3D - 1166 1224 IPR035445 -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 1255 1275 - -
Alju04g0135 1710 Coils Coil 140 176 - -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 1 67 - -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 1046 1062 - -
Alju04g0135 1710 CDD PHD5_NSD 449 494 - -
Alju04g0135 1710 SUPERFAMILY Plus3-like 808 937 IPR036128 GO:0003677
Alju04g0135 1710 Gene3D SWIB/MDM2 domain 660 756 IPR036885 -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 1023 1045 - -
Alju04g0135 1710 Pfam Plus-3 domain 812 915 IPR004343 GO:0003677
Alju04g0135 1710 Coils Coil 76 96 - -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 1570 1618 - -
Alju04g0135 1710 CDD SWIB-MDM2_like 671 746 - -
Alju04g0135 1710 ProSiteProfiles Zinc finger C3H1-type profile. 1685 1710 IPR000571 GO:0046872
Alju04g0135 1710 MobiDBLite consensus disorder prediction 753 796 - -
Alju04g0135 1710 CDD GYF 1164 1219 IPR003169 GO:0005515
Alju04g0135 1710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 541 IPR013083 -
Alju04g0135 1710 FunFam Zinc finger CCCH domain-containing protein 19 808 937 - -
Alju04g0135 1710 SMART PHD_3 449 495 IPR001965 -
Alju04g0135 1710 SMART rtf1 807 917 IPR004343 GO:0003677
Alju04g0135 1710 Coils Coil 188 208 - -
Alju04g0135 1710 SUPERFAMILY SWIB/MDM2 domain 670 747 IPR036885 -
Alju04g0135 1710 SMART swib_2 690 751 IPR019835 -
Alju04g0135 1710 FunFam Zinc finger CCCH domain-containing protein 19 659 753 - -
Alju04g0135 1710 MobiDBLite consensus disorder prediction 996 1062 - -
Alju04g0135 1710 Pfam SWIB/MDM2 domain 673 746 IPR003121 -
Alju04g0135 1710 SMART gyf_5 1165 1220 IPR003169 GO:0005515
Alju04g0135 1710 Pfam GYF domain 1167 1206 IPR003169 GO:0005515
Alju04g0135 1710 Gene3D - 809 937 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0135 Alju-ChrAlju04 1125873 1136619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0135 402 518 PHD Transcription Factor Family AT5G58610 28.125 8.80e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Alju04g0135 Plus-3 1.4e-23 No_clan