Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0082 ATGGCCTCCGGTGCTTCCTTTTATGAGGTGCTAGGGATTTCAGTAGGATCGAGCTGCCAAGAAATAAAGAGTGCCTACAGAAAACTGGCAAGAACATGTCACCCTGACGCGGTGGCCATGAACCACAAGGCGGAATCGGCCAGCGAGTTCATGAAGATCCACTCGGCCTACTCAACCTTGTCAGACCCTCATAAGCGTGCTCAATATGACAGACAGCTTTACAGCCACACAAGATCTCCTCAGTACTCATCTCTCCCCTGCCAAAATATGGAATCCATGTCAGGTTATCATCACAGATTTGGCCATAAATGGGAGACAGATCAGTCATGTGACCGAGAAAAGTACCGCCGCGCTGGTATCGTGGTCCAGGCGCTAAAGCGAGAGAGAAAGAAGGAGATCGGAACCGAGATGGGTGAGAGGGTGACTGGGAAGGTGAAGTGGTTCAGCGACCAGAAGGGTTTTGGCTTCATAACCCCTGACGATGGCGGCGAGGACCTCTTTGTTCACCAGTCTGCGATCCGTGCTGAAGGATTTCGCAGTCTCGGCGATGGAGAGTCTGTCGAGTTTCTGATCGAATCCGACTCCGATGGCCGTTCCAAGGCTGTCGATGTCACCGGCCCCGATGAGGCCAATGTTCAAGGGAGTCGACGGGGCGGAGGCGGTCCTGGGGGGAACAGATCTTACGGTGGCGGCCGAGGTGGTGGTTTCGGCGGTGGCTACGGGTCTAGCGGCGGTTTTGGTGGCAGTCGTGGTGGAAGAGGTGGAGGTGGCGGCGGTTATGGCGGTGGGGCTGGCGGCGGAGGAGGAGGCTGTTATAACTGTGGTGAGGTTGGTCACCTGGCCAGGGATTGCTACCAGGGAGGAGGCGGCGGCGGAAGGTACGGAGGCGGCGGAGGTGGCGGAGGCGGAGGCTGTTACGCCTGTGGGGAATCTGGGCATTTTGCCAGGGACTGCCCAACCGGCGCTCGCTGA 972 0.5772 MASGASFYEVLGISVGSSCQEIKSAYRKLARTCHPDAVAMNHKAESASEFMKIHSAYSTLSDPHKRAQYDRQLYSHTRSPQYSSLPCQNMESMSGYHHRFGHKWETDQSCDREKYRRAGIVVQALKRERKKEIGTEMGERVTGKVKWFSDQKGFGFITPDDGGEDLFVHQSAIRAEGFRSLGDGESVEFLIESDSDGRSKAVDVTGPDEANVQGSRRGGGGPGGNRSYGGGRGGGFGGGYGSSGGFGGSRGGRGGGGGGYGGGAGGGGGGCYNCGEVGHLARDCYQGGGGGGRYGGGGGGGGGGCYACGESGHFARDCPTGAR 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0082 323 ProSiteProfiles Zinc finger CCHC-type profile. 305 319 IPR001878 GO:0003676|GO:0008270
Alju04g0082 323 Pfam DnaJ domain 7 70 IPR001623 -
Alju04g0082 323 PANTHER COLD SHOCK DOMAIN PROTEIN 2 138 320 - -
Alju04g0082 323 SUPERFAMILY Retrovirus zinc finger-like domains 265 321 IPR036875 GO:0003676|GO:0008270
Alju04g0082 323 PRINTS Cold shock protein signature 179 197 IPR002059 GO:0003676
Alju04g0082 323 PRINTS Cold shock protein signature 143 158 IPR002059 GO:0003676
Alju04g0082 323 PRINTS Cold shock protein signature 164 173 IPR002059 GO:0003676
Alju04g0082 323 ProSiteProfiles Cold-shock (CSD) domain profile. 140 206 IPR002059 GO:0003676
Alju04g0082 323 PRINTS DnaJ domain signature 65 84 IPR001623 -
Alju04g0082 323 PRINTS DnaJ domain signature 8 26 IPR001623 -
Alju04g0082 323 PRINTS DnaJ domain signature 26 41 IPR001623 -
Alju04g0082 323 PRINTS DnaJ domain signature 45 65 IPR001623 -
Alju04g0082 323 Gene3D - 301 323 - -
Alju04g0082 323 Gene3D - 267 293 - -
Alju04g0082 323 Pfam 'Cold-shock' DNA-binding domain 142 206 IPR002059 GO:0003676
Alju04g0082 323 SUPERFAMILY Nucleic acid-binding proteins 137 206 IPR012340 -
Alju04g0082 323 CDD DnaJ 7 62 IPR001623 -
Alju04g0082 323 ProSitePatterns Cold-shock (CSD) domain signature. 154 173 IPR019844 -
Alju04g0082 323 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Alju04g0082 323 SUPERFAMILY Chaperone J-domain 4 74 IPR036869 -
Alju04g0082 323 Gene3D - 135 218 IPR012340 -
Alju04g0082 323 Gene3D DnaJ domain 1 90 IPR036869 -
Alju04g0082 323 SMART dnaj_3 5 65 IPR001623 -
Alju04g0082 323 SMART c2hcfinal6 270 286 IPR001878 GO:0003676|GO:0008270
Alju04g0082 323 SMART c2hcfinal6 304 320 IPR001878 GO:0003676|GO:0008270
Alju04g0082 323 Pfam Zinc knuckle 270 284 IPR001878 GO:0003676|GO:0008270
Alju04g0082 323 Pfam Zinc knuckle 304 319 IPR001878 GO:0003676|GO:0008270
Alju04g0082 323 CDD CSP_CDS 141 206 IPR002059 GO:0003676
Alju04g0082 323 SMART csp_8 142 207 IPR011129 GO:0003676
Alju04g0082 323 ProSitePatterns Nt-dnaJ domain signature. 50 69 IPR018253 -
Alju04g0082 323 ProSiteProfiles Zinc finger CCHC-type profile. 271 284 IPR001878 GO:0003676|GO:0008270
Alju04g0082 323 MobiDBLite consensus disorder prediction 193 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0082 Alju-ChrAlju04 811724 814640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0082 8 70 C2H2 Transcription Factor Family AT1G74250 48.485 2.23e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Alju04g0082 CSD 2.4e-25 CL0021