Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0051 ATGACTTTTGTAACAATCAGAAGAGATCTATCTATTTCTGTTATTTATGGCTAGCGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGCTGACCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTGAAGGCAGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCCTGATAATGGACCGCAATTCCCGTCGATCTAAGGGTGTTGGGTATATCGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTAGCCAACCACTTCTTGGCCAACCAGTGATGGTGAAGCCATCAGAAGCGGAAAAGAACTTGGTTCAGTCTACTACATCTGTATCTAGTGGATCCACTGGATTTATGGGCCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGCAATTTGCATTTCAGTATTTCTGAAGCTGATATTCGTGGGGTTTTTGAAGCATTCGGTCAGGTTGAGCTGGTCCAGCTGCCTCTTGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGTGCGCCTTGAAGATGCAAGGAATGCCCAGAGCTTAAATGGACAACTGGAAATTGGTGGCAGGACAATAAAGGTATCTGCAGTTATTGATCAAACCGGAATGCTAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGATGATGGTGGCATGTCCCTAAACGCATGTTCTCGGGCATTACTCATGCAGAAGTTGGATCGTAGTAGCACTGGATCAGGTATCACTGGTTCCCTAGGTAAGTCTGCTACCAATAACACAGGCCTTGACCTACCAGCTACAGCACATGCGGGAGCTGCCTCTGTGGGTTCTCTACTGGTTTCTCCGATTGCTTCAGTTCCTTCGGCAGCTGGGTTTCCAGGTGGAAGTCTACAAATTCCCACTGCTACTGCTACATTTCCTACTATTGATACAATTGGTGCTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAAAGATGAGAAGGAACCAGACTTTGAGTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGAACGTTGACACATGTATATGTCGACAAGAACACTGCTGGCTTTGTCTACTTACGATTTGAAAATACTCAAGCTGCTATAAACGCACAGCGGTCTCTGCATGGGAGGTGGTTTGCTGGGAAGATGATCACTGCTAGCTTCATGGTGCCTCAGTTATATGAGGATAAGTTCAAAGACAGCAGATAG 1287 0.4483 MTFVTIRRDLSISVIYGXRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSSQPLLGQPVMVKPSEAEKNLVQSTTSVSSGSTGFMGPYSGGARRLYVGNLHFSISEADIRGVFEAFGQVELVQLPLDETGHCKGFGFVQFVRLEDARNAQSLNGQLEIGGRTIKVSAVIDQTGMLEVGGNTGDFDDDDDGGMSLNACSRALLMQKLDRSSTGSGITGSLGKSATNNTGLDLPATAHAGAASVGSLLVSPIASVPSAAGFPGGSLQIPTATATFPTIDTIGAPSECLLLKNMFDPKDEKEPDFELDIKEDVEAECSKFGTLTHVYVDKNTAGFVYLRFENTQAAINAQRSLHGRWFAGKMITASFMVPQLYEDKFKDSR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0051 428 SMART rrm2_1 144 216 IPR003954 GO:0003676
Alju04g0051 428 SMART rrm2_1 335 413 IPR003954 GO:0003676
Alju04g0051 428 SUPERFAMILY RNA-binding domain, RBD 331 414 IPR035979 GO:0003676
Alju04g0051 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 214 IPR000504 GO:0003723
Alju04g0051 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 106 IPR000504 GO:0003723
Alju04g0051 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 410 IPR000504 GO:0003723
Alju04g0051 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 220 IPR000504 GO:0003723
Alju04g0051 428 SMART rrm1_1 335 413 IPR000504 GO:0003723
Alju04g0051 428 SMART rrm1_1 40 112 IPR000504 GO:0003723
Alju04g0051 428 SMART rrm1_1 144 216 IPR000504 GO:0003723
Alju04g0051 428 Gene3D - 330 428 IPR012677 -
Alju04g0051 428 FunFam Splicing factor, CC1-like protein 329 428 - -
Alju04g0051 428 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 19 426 IPR006509 GO:0003723|GO:0005634|GO:0006397
Alju04g0051 428 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 235 352 IPR029123 -
Alju04g0051 428 CDD RRM3_RBM39_like 333 415 - -
Alju04g0051 428 Gene3D - 125 222 IPR012677 -
Alju04g0051 428 Gene3D - 16 124 IPR012677 -
Alju04g0051 428 SUPERFAMILY RNA-binding domain, RBD 32 141 IPR035979 GO:0003676
Alju04g0051 428 SUPERFAMILY RNA-binding domain, RBD 141 233 IPR035979 GO:0003676
Alju04g0051 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 116 IPR000504 GO:0003723
Alju04g0051 428 CDD RRM1_RBM39_like 40 112 - -
Alju04g0051 428 FunFam RNA-binding protein 39 isoform X1 32 124 - -
Alju04g0051 428 NCBIfam splicing factor, CC1-like family 19 426 IPR006509 GO:0003723|GO:0005634|GO:0006397
Alju04g0051 428 FunFam CC1-like, splicing factor 138 246 - -
Alju04g0051 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 417 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0051 Alju-ChrAlju04 586622 596889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0051 40 206 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 5.22e-14 72.0