Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0034 ATGGACTCCCTCAGAAAATCCTTCAAGTCCTATTATTCTTACAAACACCCCAGAAAGATCTCTGCTGGCACAGACGCCGAATCCGGCCACGAACAGCTTCCCATTCTCCTGGATCAAGAAAATCCCTACGATCACCCTCCTCCTCACCTCACTGCTCCCTCATCAATGACCTCCACTACTTCCCCGCATCGGCCCGAGGTTGTCGTTAAAATCGACGAAGGTGACTCCAGAGGTCCCGCAGTGCAACAAGGTGGCAATATTTGGAGAGAAACTAGCTATGACTTCTGGAACAATGGAGACGTGAGCAAGAGTGTTAGTGACGGGAGTGCTGGTGCTAGTACTAGTGGTAATGACGAGGATAGCTTTGATTTCCGGCATCATGGGCCGGGTTCCGAGGATCCACCCTCCATGCTCATTGGTAAGTTCTTGCACAAACAGAAAGCGTCTGGTGATCTGTCTCTGGATATGGATTTAGAAATGGAGGAGTTCCAGCATGACTACAAATTGCCTCCGGTGGAAGAGTCTCCGCGGCTCAATTGCATTTCCAAGGACCTCAAAGTCTCGTTCGAGGAACCCACTTCCAATGTTGTTGAACCGGCAAGTGATACCGTTAGACGAAGGTACAGGGAGTCGCCGGGTAACACCGAAGTTCATAAATCGCCGCAAAGCGATCAACGTGGATCGCCGGCTGTTGCTCAAAGTGGCAATGCTGGTGCGGGAGATGGCGAGGTGGTAAGATGTACCTCCAACGCCTCGGTTGAAAGGAATCTTTCGTTGCAGAGGAAATCTGCCTTGCTGAAGGCCAGAAATAGGTCCAGATTGTTGGACCCGCCGGAGGAGCCGGACCGAAAGTCTGGTCGGGTGGCAAAATCAGGGCAAATGCTTTCGGGGATGTTAGGGAAAAAAGTGGAGGAGGAGGACGACGACCCTTTTTTGGAGGAAGACTTGCCGGACGAGTTTAAAAAGACCCATTTTAGCATATGGATTCTGCTGGAGTGGTTGAGTTTGATTTTGTTTGTTGCTGCGCTTGCATGCACGCTGAGTATCCCAGTTTTGAGGAATAAGATTCTCTGGAAGCTCCAGTTATGGAAATGGGAGGTGATGATCCTGGTTCTAATATGTGGTCGGTTGGTTTCTGATTGGGTAATTCGAATTTTGGTGTTCTTTATCGAAAGAAATTTCCTTTTGCGGAAGAGAGTCCTTTATTTTGTTTACGGTGTGAAGAAGGCAGTTCAAAATTGTCTATGGTTGGGATTTGTTTTGATTGCTTGGCATCTCTTGTTCGATAAGAAGGTCGAGAGGGAGACTAGAGGCAACGCCCTTCAATATGTCACCAAGGTCTTGGTCTGTTTCTTGGTGGGTACTTTGGTGTGGTTGGCAAAAACTCTTGTGGTTAAGGTTATGGCTTCTTCCTTCTATACAAGCACCTACTTTGATAGGATTCAGGAGTCACTGTTTAATCAGTTTGTGATTGAAACACTGTCTGGGCCACCTCTGATAGAAATTCAAAAGTCAGAGGAAGAGGAACAAAAACTTGCTGATGAGGTTCAGAAACTGCAGAATGCTGGGGTTAGCATTCCCCCTGAGCTTAGGGCAACTGCCTTCTCCACAACCAAGAGTCCAAGGGCAGCTGCCTTCTCCAAAACTAAGAGTCCAAGGACAACGAAAAGCGGAATGCTCCAGAAAAGCCCTCGTCTTATAAGTGGAAATTTTTCTCGTCCACTCTCCCATAAATCGGATGATGGGATTACTATTGATCACCTGCATAAGATGAATCCAAAAAATGTCTCTGCCTGGAATATGAAAAGGTTAATGAATATGGTCCGGCATGGCACTCTTTCTACACTGGATGAGCAGATACTTGATTCAACTGAAGATGATGAAAATGCCACACAGATTAGAAGTGAAAATGAGGCAAAAACCGCGGCAAAGAAAATATTTCAGAATGTTGCCAGGCGGGGTTGCAGGTTCATTTACCTGGAGGATTTGATGCGATTTATGCGGGAAGATGAAGCTGAGAAAACCATGGATCTCTTCGAAGGAGCGTCTGAGTCTGGGAAGATCAGCAAATCTGCCCTGAAGAACTGGGTGGTTAATGCCTTCAGAGAGAGGAGAGCACTTGCTTTGACATTGACTGATACCAAAACCGCAGTGAACAAACTTCATCGGATACTCAATTTTATAGTTGGCATCATTATACTGGTTATTTGGCTACTAATACTGGGAATTGCCACCACCAAATTTCTTCTCTTTGTCAGCTCACAGCTTGTTTTGGTTGCGTTTATATTTGGAAATACCTGCAAGACGATATTTGAAGCAATTATTTTCTTATTTATCATGCACCCATTTGATGTGGGGGATAGATGTGAAATCGATGGGATTCAGATGGTTGTGGAAGAAATGAATATACTGACAACCATATTTTTAAGATATGACAATCAAAAAATAATCATCCCCAACAGCGTCCTTGCCACTAAGGCCATACATAATTACTACCGGAGTCCTGACATGGGAGATGCTATTGATTTCTTTATGCATGTGTCTACCCCAGCTGAAAAGATTGCACTCATGAAACAAAGAATACACAGCTTCATCGATAACAAGAAGGAGCACTGGTATCCTTCATCTTTTTTAGTCTTCAGGGATCTGGAACAATTAAACATGATTAGGATATCGATTTGGCCAACTCATAGAATGAACCACCAAGACATGGGAGAAAGGTTTATCAGAAGATCCCTTCTGATCGAAGAGCTGCTCAGGATATTCCGGGAGCTTGACATCCAGTACCGTCTTCTTCCTCTTGATATTAACATCAGAAGCATGCCTACCACTTCTGAACGGCTTCCCCCAAGTTGGGCCAACATCACAGGTTGA 2874 0.453 MDSLRKSFKSYYSYKHPRKISAGTDAESGHEQLPILLDQENPYDHPPPHLTAPSSMTSTTSPHRPEVVVKIDEGDSRGPAVQQGGNIWRETSYDFWNNGDVSKSVSDGSAGASTSGNDEDSFDFRHHGPGSEDPPSMLIGKFLHKQKASGDLSLDMDLEMEEFQHDYKLPPVEESPRLNCISKDLKVSFEEPTSNVVEPASDTVRRRYRESPGNTEVHKSPQSDQRGSPAVAQSGNAGAGDGEVVRCTSNASVERNLSLQRKSALLKARNRSRLLDPPEEPDRKSGRVAKSGQMLSGMLGKKVEEEDDDPFLEEDLPDEFKKTHFSIWILLEWLSLILFVAALACTLSIPVLRNKILWKLQLWKWEVMILVLICGRLVSDWVIRILVFFIERNFLLRKRVLYFVYGVKKAVQNCLWLGFVLIAWHLLFDKKVERETRGNALQYVTKVLVCFLVGTLVWLAKTLVVKVMASSFYTSTYFDRIQESLFNQFVIETLSGPPLIEIQKSEEEEQKLADEVQKLQNAGVSIPPELRATAFSTTKSPRAAAFSKTKSPRTTKSGMLQKSPRLISGNFSRPLSHKSDDGITIDHLHKMNPKNVSAWNMKRLMNMVRHGTLSTLDEQILDSTEDDENATQIRSENEAKTAAKKIFQNVARRGCRFIYLEDLMRFMREDEAEKTMDLFEGASESGKISKSALKNWVVNAFRERRALALTLTDTKTAVNKLHRILNFIVGIIILVIWLLILGIATTKFLLFVSSQLVLVAFIFGNTCKTIFEAIIFLFIMHPFDVGDRCEIDGIQMVVEEMNILTTIFLRYDNQKIIIPNSVLATKAIHNYYRSPDMGDAIDFFMHVSTPAEKIALMKQRIHSFIDNKKEHWYPSSFLVFRDLEQLNMIRISIWPTHRMNHQDMGERFIRRSLLIEELLRIFRELDIQYRLLPLDINIRSMPTTSERLPPSWANITG 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0034 957 PIRSF Memb_At2g17000 42 956 IPR016688 -
Alju04g0034 957 MobiDBLite consensus disorder prediction 270 291 - -
Alju04g0034 957 MobiDBLite consensus disorder prediction 272 287 - -
Alju04g0034 957 Pfam Mechanosensitive ion channel 723 927 IPR006685 GO:0016020|GO:0055085
Alju04g0034 957 MobiDBLite consensus disorder prediction 215 232 - -
Alju04g0034 957 MobiDBLite consensus disorder prediction 19 63 - -
Alju04g0034 957 MobiDBLite consensus disorder prediction 191 243 - -
Alju04g0034 957 Coils Coil 502 522 - -
Alju04g0034 957 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 45 952 IPR016688 -
Alju04g0034 957 MobiDBLite consensus disorder prediction 104 138 - -
Alju04g0034 957 Gene3D - 782 831 IPR023408 -
Alju04g0034 957 FunFam Predicted mechanosensitive ion channel 782 831 - -
Alju04g0034 957 SUPERFAMILY Sm-like ribonucleoproteins 772 831 IPR010920 -
Alju04g0034 957 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0034 Alju-ChrAlju04 422418 426404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0034 64 953 Mechanosensitive Ion Channel Family AT1G78610 57.143 0.0 964