Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3380 ATGATGCGGTCGGTCCGAGTGTTATTTTTGTCCGCGAACAGCCAAAATTCCGTCCAAGTCCACACTGCGCACCACTCTAGACCCCTGGTCTCCCGCGGTCTCGCTTGTCCGAAAATGTTGAAGCTGTCCCGCTTGCTCGCTTTCAGGCATCAGGTATCGGAAACATTGTTATCTCAGAAAGCTGATCTTAGAGACAGTCTATTGCTTCTGTGTGGTTCTACTACCCATTCAGCTGGAATTTCTACTGCAGCAAATAATTATTCTGCTAAAGGATATACTTCAAGTCAAATATTTGTTCCGTATTCTGTTTTCAAAGGCAAAGCTGCACTCTCTCTGAGTCCCCGACTTCCAACTTTCACTAAGTTGGCTTCTGGGGCTGTTATAATTGATCGTCGTGGCACAATGATGATGACTTTTGTACCCGCTGTTGGTGAACGCAAATATGACTGGGAGAAGAAACAGAGATTTGCTCTTTCAGCAACGGAGGTTGGTTCTTTGATAAGCATGGGCTCCACGGATTCCTGTGAATTCTTTCATGACCCTGCAATGTTATCAAGTAATGCTGGTCAAGTCAGGAAGAGCTTATCAATTAAGCCACATGCAGACAGCTCTGGCTACTTTATGTCTTTGTCTGTTGTCAATAACATTTTAAAAACCAAAGAATACTTGTCTGTTCCAGTCACAACTGCTGAGTTTGCTGTGATGAAGACTGCCTGCAGCTTTGCGTTGCCGCACATTATGGGTTGGGATCGTCTGACGCATGATCAGTCCGGAGGCATGCATGGTCAGCAATCAAAGGTGGACCCGCAAGTTGTAGACTTGGAGTGGTCAAAGTGA 837 0.4564 MMRSVRVLFLSANSQNSVQVHTAHHSRPLVSRGLACPKMLKLSRLLAFRHQVSETLLSQKADLRDSLLLLCGSTTHSAGISTAANNYSAKGYTSSQIFVPYSVFKGKAALSLSPRLPTFTKLASGAVIIDRRGTMMMTFVPAVGERKYDWEKKQRFALSATEVGSLISMGSTDSCEFFHDPAMLSSNAGQVRKSLSIKPHADSSGYFMSLSVVNNILKTKEYLSVPVTTAEFAVMKTACSFALPHIMGWDRLTHDQSGGMHGQQSKVDPQVVDLEWSK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3380 278 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 54 278 IPR013742 GO:0003697|GO:0006355|GO:0006952
Alju03g3380 278 Pfam Whirly transcription factor 103 237 IPR013742 GO:0003697|GO:0006355|GO:0006952
Alju03g3380 278 Gene3D Transcriptional Coactivator Pc4; Chain A 88 261 IPR009044 GO:0003677|GO:0006355
Alju03g3380 278 SUPERFAMILY ssDNA-binding transcriptional regulator domain 95 256 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3380 Alju-ChrAlju03 57590369 57593991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3380 94 278 Whirly Transcription Factor Family AT1G71260 69.312 2.84e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Alju03g3380 Whirly 3.2e-58 CL0609