LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g3341	ATGACGAGTTTTCACCATTGCAATAAAAAAGCAGCATCAGAGCCGGCGCACGGCAGAAAGAGAATTCCAAAAGGCAAGGTGGGGAATAATATGGATAGGGTGTTTTCAGTGGATGAAATCTCCGACCAGTTCTGGTCATCGCCGATGTCCACCGGAACCCATGAACCCTCCAAGATGAACCGTAGCGCCTCCGAGTGGGCCTTCCAGCGATTCCTTCAGGAAGCTTCTGTACCCTCCCCGACCTCTCCGGCTTCTTCCTCCCTCCTTCCTCACCCTAACGATGGCCGTTCGCTTCACGTCAAGGATCAACCCAAACAGGATCCCGCTCCGAATACGGGGGTCACGCCGCTTCAGAACAATGGTCCCGTCCAGGCCAACGTTCCTTCTTCCCCTCCTTCTATTCCTAACATTCCCGTTAATTCCGATGACTACCAGGCTTACCTCAAGAACAAACTCAATCTCGCCTGTGCCGCGGTCGCATTGTCTCGGCATGGGTCTTTAATCAAAGCACAAGATTCAGCTCCTTTTGTTGACAGTGGATCGCAGGCTTCTAATTCTTCTAAAGTTGGAGCTCAGGCTACTTTTAAAGGATCTGGCGTATCTGGTCCATCTGGAAGTGATCCATCTAAATTACTAGATAAAGATACCAAAGCACCAGTTGGAATTCCTTCCTTACCTGTGATTCAAAAGAAGCCTGCTGTTGCAAACAAGCCAACAACTAGCGGATCATCAAGGGACCTGTCGGATGATGATGACATTGAGGGAGAAACTGAGATGACTGAAAATATGGACCCTGCTGATGCAAAACGAGTAAGGAGGATGCTTTCCAATAGGGAATCTGCTAGACGTTCAAGAAGAAGAAAGCAGGCTCATTTAACTGAGCTTGAGACACAGGTTTCTCAATTAAGAGTTGAAAATTCATCCTTGTTAAAGCGTCTTACTGATGTAAGCCAGAAGTACAATGAATCTGGTGTTGACAACAGAGTGCTAAAAGCTGACATTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACTGTCAAAAGAATTACTGGATTGAACCCAATGTTTCATGCCATGTCCGAGATATCATCAATAGGAATCTCTTCATTCGATGGAAGCCCTCCAGACACGTCAGCGGATGCAGCTGTTCCCATGCAAGATGATCCAATCCATCACTTTTATCAACCTGCAAATACTCCTTTGTCCAGTCATGATCTGAGAGTGAACAATGGATTGGGGGATGTTGGTTCAAATGAAAATGTCCAGCAGAGCAGGGCAGCTGTGGCAGCTGGAAACAAGATGGGACAGGCAGTTTCCCTTCAGAGGGTGGCTAGCTTGGAACATCTGCAGAAGAGAATTTGTGGTGGTGCAGATTCATCTGGACCTTCTTCTAGTGGAGATCATTAG	1413	0.4706	MTSFHHCNKKAASEPAHGRKRIPKGKVGNNMDRVFSVDEISDQFWSSPMSTGTHEPSKMNRSASEWAFQRFLQEASVPSPTSPASSSLLPHPNDGRSLHVKDQPKQDPAPNTGVTPLQNNGPVQANVPSSPPSIPNIPVNSDDYQAYLKNKLNLACAAVALSRHGSLIKAQDSAPFVDSGSQASNSSKVGAQATFKGSGVSGPSGSDPSKLLDKDTKAPVGIPSLPVIQKKPAVANKPTTSGSSRDLSDDDDIEGETEMTENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDVSQKYNESGVDNRVLKADIETLRAKVKMAEETVKRITGLNPMFHAMSEISSIGISSFDGSPPDTSADAAVPMQDDPIHHFYQPANTPLSSHDLRVNNGLGDVGSNENVQQSRAAVAAGNKMGQAVSLQRVASLEHLQKRICGGADSSGPSSSGDH	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g3341	470	MobiDBLite	consensus disorder prediction	10	27	-	-
	Alju03g3341	470	FunFam	BZIP transcription factor	267	318	-	-
	Alju03g3341	470	Pfam	Basic leucine-zipper C terminal	336	459	IPR020983	-
	Alju03g3341	470	MobiDBLite	consensus disorder prediction	75	137	-	-
	Alju03g3341	470	CDD	bZIP_plant_GBF1	270	321	IPR045314	GO:0003700\|GO:0006355
	Alju03g3341	470	MobiDBLite	consensus disorder prediction	1	34	-	-
	Alju03g3341	470	Coils	Coil	278	312	-	-
	Alju03g3341	470	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	272	287	IPR004827	GO:0003700\|GO:0006355
	Alju03g3341	470	MobiDBLite	consensus disorder prediction	75	92	-	-
	Alju03g3341	470	Gene3D	-	268	323	-	-
	Alju03g3341	470	PANTHER	BASIC LEUCINE ZIPPER 63	31	459	-	-
	Alju03g3341	470	MobiDBLite	consensus disorder prediction	176	261	-	-
	Alju03g3341	470	Pfam	bZIP transcription factor	268	320	IPR004827	GO:0003700\|GO:0006355
	Alju03g3341	470	Coils	Coil	327	354	-	-
	Alju03g3341	470	SUPERFAMILY	Leucine zipper domain	269	319	IPR046347	GO:0003700\|GO:0006355
	Alju03g3341	470	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	267	322	IPR004827	GO:0003700\|GO:0006355
	Alju03g3341	470	MobiDBLite	consensus disorder prediction	176	205	-	-
	Alju03g3341	470	SMART	brlzneu	265	329	IPR004827	GO:0003700\|GO:0006355
	Alju03g3341	470	MobiDBLite	consensus disorder prediction	108	127	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g3341	Alju-ChrAlju03	57345881	57348874	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g3341	31	358	bZIP Transcription Factor Family	AT4G02640	40.588	7.28e-47	165

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Alju03g3341		bZIP_C	3.1e-44	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju03g3341	03	57345881	57348874	Alju03g3341	03	57345881	57348874	CCT
	Alju03g3341	03	57345881	57348874	Alju03g3341	03	57345881	57348874	ECH