LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g3333	ATGCACATATCCAATTGTTTAGCAAATATTGCATATGTTGAGGAAAATTTTATTATTGATCACATGGAGCAGTATGAAGTACTGGAGCAAATTGGAAAAGGTGCTTTTGGCTCCGCTCTTCTTGTGCGGCATAAGCATGAGAAAAAGAAATATGTACTGAAGAAAATTCGCCTTGCTCGCCAAACCGAGCGGTCTCGTAGATCTGCACATCAGGAGATGGAGCTAATCTCTAAATTAAGAAATCCATTTATTGTTGAGTATAAAGATTCCTGGGTAGAAAAGGGGTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCAGAAGCTATAAAGAAGGCTAATGGTGTTTTTTTTCCTGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCCCTCGACTACTTACACCTTAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCAAGGTATACGCCTTGGTGATTTTGGACTTGCCAAAATATTGACTTCAGATGATCTTGCTTCCTCTGTTGTTGGAACTCCTAGTTACATGTGCCCTGAGCTCTTGGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACAGCTCATAAGCCGGCATTTAAAGCATTTGATATACAGGCCCTAATCAACAAGATTAACAAGTCTATAGTGGCTCCACTGCCAACAACGTATTCTGGTGCATTTCGGAGTCTCGTTAAAAGCATGCTGCGGAAAAATCCTGAGCTTAGACCTAGTGCTGCGGAGCTGCTTGGACACCGGCATCTTCAACCTTATGTTCACAAGATCCATCTAAAGCTTAATAGCCCCAGGCGAAGTACACTACCAGTTCACTGGTCAGAATCCAACTACACGAGGAAAACTAGATTTCTGGAGTCAGAAGATGATCCTGTTTCAGTATACAGAGATAAGCTACAATCTCTTGGCAATGATCTGACTCCTAATCCGAGCATATCTGGTGCTGAGCAAGATTCTGTTTGCTCTACCCTAGAAATAGATTGTACTCCAGATCATTTGAATAAAGGGTTGGCAGAGCTATGTATTGGAGATAGCCTCGAGGTGAAGTCAATCTGTAAGCCTATCGTTTCAAGGACATCTAGTTTCACTAAGACTCCAAGACATACCTCCATAAAGGCTTCTGCCACCTCTAAGACATCAAAGGAGCCCACAAAAAAGCGTGAGTCGCTTCCTTCTCCACGCAAAGCCAGACAATCAGTCTATACAACTCGCAGAGCTTCATTTCCATTGCATACAAGAAGTTCTGATCAACACTCTGGTCATGGGCCTGGTACTCTTAGCCATATAAAGTCGCCAGACATTTCAGTAAACTCTCCTAGAATTGATAAGATAGCTGAATTCCCACTAGCGTCATATGAGGATCCACTTTTTCCCATCTATAGAACTCCAACCTCAGCCCAGGGTTCCTCAGGCTCCACAACTTGTGGTGATCGTTTAGTCATGAAGGATAAATGCACGGTTCAAATATGTGATAGAGGCTCTGTCAAGCATCAGTTGACAGATTCATGGCAGGGAATCAAGCTAAACACGTTTCGGGAAAATGCTGAGGATAAAAATGGCTCCTCTGATCGAAATGCAACCGCTGGAGCATCAAGCCATGCCTCTTCAGACATGCGCCGCAGGCAGTTTGACACTTCATCATTCCAACAAAGGGCTGAAGCCTTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAACATGAAAGGTATGAAGAACTAGGGGTTTTATTGAAACCATTTGGGCCAGGGAAGGTTTCTCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAGCACACTCAACCGTGGAGAATCCCTATAA	1920	0.426	MHISNCLANIAYVEENFIIDHMEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVFFPEEKLCKWLVQLLMALDYLHLNHILHRDVKCSNIFLTKDQGIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTTYSGAFRSLVKSMLRKNPELRPSAAELLGHRHLQPYVHKIHLKLNSPRRSTLPVHWSESNYTRKTRFLESEDDPVSVYRDKLQSLGNDLTPNPSISGAEQDSVCSTLEIDCTPDHLNKGLAELCIGDSLEVKSICKPIVSRTSSFTKTPRHTSIKASATSKTSKEPTKKRESLPSPRKARQSVYTTRRASFPLHTRSSDQHSGHGPGTLSHIKSPDISVNSPRIDKIAEFPLASYEDPLFPIYRTPTSAQGSSGSTTCGDRLVMKDKCTVQICDRGSVKHQLTDSWQGIKLNTFRENAEDKNGSSDRNATAGASSHASSDMRRRQFDTSSFQQRAEALEGLLEFSARLLQHERYEELGVLLKPFGPGKVSPRETAIWLSKSFKESTLNRGESL	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g3333	639	MobiDBLite	consensus disorder prediction	424	463	-	-
	Alju03g3333	639	Pfam	Protein kinase domain	25	278	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g3333	639	MobiDBLite	consensus disorder prediction	408	422	-	-
	Alju03g3333	639	MobiDBLite	consensus disorder prediction	543	574	-	-
	Alju03g3333	639	SMART	serkin_6	25	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g3333	639	ProSiteProfiles	Protein kinase domain profile.	25	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g3333	639	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	22	589	-	-
	Alju03g3333	639	Gene3D	Phosphorylase Kinase; domain 1	2	104	-	-
	Alju03g3333	639	ProSitePatterns	Protein kinases ATP-binding region signature.	31	54	IPR017441	GO:0005524
	Alju03g3333	639	Gene3D	Transferase(Phosphotransferase) domain 1	105	295	-	-
	Alju03g3333	639	CDD	STKc_Nek	24	274	-	-
	Alju03g3333	639	MobiDBLite	consensus disorder prediction	392	464	-	-
	Alju03g3333	639	FunFam	Serine/threonine-protein kinase Nek2	22	104	-	-
	Alju03g3333	639	MobiDBLite	consensus disorder prediction	392	407	-	-
	Alju03g3333	639	MobiDBLite	consensus disorder prediction	550	565	-	-
	Alju03g3333	639	SUPERFAMILY	Protein kinase-like (PK-like)	22	328	IPR011009	-
	Alju03g3333	639	FunFam	Serine/threonine-protein kinase Nek3	107	353	-	-
	Alju03g3333	639	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	146	158	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g3333	Alju-ChrAlju03	57292222	57297973	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g3333	31	280	MAP Kinase Kinase Kinase	AT1G53570	31.765	9.65e-35	136

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Alju03g3333		Pkinase	2.8e-63	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju03g3333	03	57292222	57297973	Alju03g3333	03	57292222	57297973	CCT
	Alju03g3333	03	57292222	57297973	Alju03g3333	03	57292222	57297973	ECH