Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3297 ATGAAAACTCCACGGGGACAACCGAGGGGAAAGTGGTTGAGGTTCAGAACGTTGGCAACCAAAAGGAAGAGAGAGATGGGGGAGCAAGCAGCAGCTGGCTGGCCCCCTTGGCTTACGGCCGTGTGTGGAGAAGCACTCAGTGGGTGGATTCCGCGGAAGGCTGACTCATTTGAGAAAATTGATAAGATTGGGCAAGGAACGTATAGCAATGTGTACAAAGCTAAAGACATGTTGACTGGTAAAATTGTTGCATTGAAGAAGGTTCGATTTGACAATTTGGAGCCTGAGAGTGTGAAGTTCATGGCCAGAGAGATTCTTATTTTGCGAAGATTGGATCATCCCAATGTTGTAAAGTTGGAAGGTTTAGTTACATCAAGAATGTCCTGTAGTTTGTATTTGGTGTTTAATTACATGGAGCATGATTTGGCCGGACTTACTGCGAGCCCAGGAATCAAGTTCACTGAGCCTCAGGTCAAATGTTATATGCACCAACTATTATCTGGACTTGAGCACTGTCATAACCTTCAAGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAGATAGCTGACTTTGGACTGGCATCTTTCTTTGACCCTAACCGGAAGTTGCCGATGACTAATCGTGTAGTTACACTTTGGTATCGACCTCCTGAGCTGCTTCTTGGTGCCACAGAATATGGTGTGGGAGTGGACCTTTGGAGTGCAGGTTGCATTTTGGGAGAGTTATTGGCAGGAAAGCCAATTATGCCTGGTCGCACAGAGGTGGAGCAACTGCATAAGATATACAAACTATGTGGTTCACCCACAGATGAATACTGGAGGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCTCGAGAGCCTTACAAGAGATGCTTACGAGAGACATTTAAAGATTTTTCACCTTCTGCACTTACACTTATGGATGCCCTTCTTGCTCTTGATCCAGCAGAACGGAAGACTGCATCAGATGCCCTAAGAAGTGAGTTCTTCGCCACAGAACCTTATGCCTGTGATCCTTCTAGTCTTCCCAAATATCCACCAAGCAAGGAAATGGATGCTAAACGCCGAGATGATGAAGCAAGGAGACAACGAGCTGCAGGCAAAGCTCAGGTTGATGGTGCAAAGAAACTTCGAACACGTAATCGAGCTAAACCTAATCCTGCTCCTGAAGCCAACGCTGAGCTTCAATCCAATATTGATAGAAGGCGTCTAATAACTCGTGCAAATGCAAAGAGCAAGAGTGAGAAGTTCCCACCACCACATCAAGATGGACAACTGGGCTTTCCTTTGGGATCTTCACATCATATTGATCCAGATATCGTTCCTCCTGATGTCTCTTTTAGTTCAACCACATTTACCTATTCAAAAGAACCATTCCAAGCTTGGTCAGGTCCCATTGCTGCGCCCAAGCAGAAGAAACACGCTTCCGGTGATGCAGTTGATTTGTCCAAACATCGTACAAGTGCCCTCAAGGATAAACGTTAA 1518 0.448 MKTPRGQPRGKWLRFRTLATKRKREMGEQAAAGWPPWLTAVCGEALSGWIPRKADSFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFNYMEHDLAGLTASPGIKFTEPQVKCYMHQLLSGLEHCHNLQVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNRKLPMTNRVVTLWYRPPELLLGATEYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPTDEYWRKSKLPNATLFKPREPYKRCLRETFKDFSPSALTLMDALLALDPAERKTASDALRSEFFATEPYACDPSSLPKYPPSKEMDAKRRDDEARRQRAAGKAQVDGAKKLRTRNRAKPNPAPEANAELQSNIDRRRLITRANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDIVPPDVSFSSTTFTYSKEPFQAWSGPIAAPKQKKHASGDAVDLSKHRTSALKDKR 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3297 505 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Alju03g3297 505 SUPERFAMILY Protein kinase-like (PK-like) 51 347 IPR011009 -
Alju03g3297 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Alju03g3297 505 FunFam probable serine/threonine-protein kinase At1g54610 44 139 - -
Alju03g3297 505 SMART serkin_6 57 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g3297 505 CDD STKc_CDK9_like 57 341 - -
Alju03g3297 505 MobiDBLite consensus disorder prediction 407 429 - -
Alju03g3297 505 ProSiteProfiles Protein kinase domain profile. 57 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g3297 505 FunFam probable serine/threonine-protein kinase At1g54610 140 381 - -
Alju03g3297 505 MobiDBLite consensus disorder prediction 359 390 - -
Alju03g3297 505 MobiDBLite consensus disorder prediction 485 505 - -
Alju03g3297 505 Gene3D Phosphorylase Kinase; domain 1 44 139 - -
Alju03g3297 505 PANTHER CELL DIVISION PROTEIN KINASE 55 345 - -
Alju03g3297 505 Pfam Protein kinase domain 57 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju03g3297 505 MobiDBLite consensus disorder prediction 474 505 - -
Alju03g3297 505 Gene3D Transferase(Phosphotransferase) domain 1 140 381 - -
Alju03g3297 505 MobiDBLite consensus disorder prediction 349 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3297 Alju-ChrAlju03 57023544 57026876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3297 49 381 Core Cell Cycle Gene Families AT5G10270 53.009 1.55e-123 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Alju03g3297 Pkinase 2.9e-67 CL0016