Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3257 ATGCCTAGTATCGTGGAATTAAACGCAGACGTTGAAGCAGAGGTCCTCGATACTGCAGAGCAGAGCATCGCCTGTTCAAGAAGGATGGACCATCAAGGGCATAACCAGAACCAACCCATGGATCATCATCAACTGCCTTATGCTTCAAATCCATACCAAGCGACCCAAATATCTGCAACGCCGGGATCGGCTGTGACATCAGTTGGGAACATTCAGTACAGTGGTCAGCCTGCTGGAGCTCAACTTGGACAACACCAACTTGCTTATCAGCACATTCACCAGCAACAGCAGCAGCAACTTCAGCAACAACTCCAAACCTTTTGGGCTAATCAGTACCAAGAAATCGAGAAGGTGACTGATTTCAAAAATCACAGCCTTCCCTTGGCGAGGATCAAGAAGATTATGAAAGCTGATGAAGATGTTCGAATGATATCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAGATGTTTATACTAGAGCTAACTCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGAGAACACTTCAGAAGAACGATATTGCAGCAGCAATCACAAGGACTGATATATTTGATTTCTTGGTTGATATTGTGCCGCGTGAGGATTTGAAAGATGAAGTGCTTGCATCTATCCCAAGAGGGACAATGCCTGTGGCAGGGCCTGCTGATGCTCTTCCTTATTGTTACATGCCACCTCAGCATGCACCGCAAGCAGGCGCGTCTGGCGTCATAATGGGTAAGCCTGTGATGGACCCGACCATGTATGCCCAACAGTCTCATCCCTACATGCCACAGCAGATGTGGCCACAGCCTCCAGATCAGCATCGACAACCAACTCCTGATCGTTAG 858 0.4767 MPSIVELNADVEAEVLDTAEQSIACSRRMDHQGHNQNQPMDHHQLPYASNPYQATQISATPGSAVTSVGNIQYSGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAPQAGASGVIMGKPVMDPTMYAQQSHPYMPQQMWPQPPDQHRQPTPDR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3257 285 Gene3D Histone, subunit A 87 203 IPR009072 GO:0046982
Alju03g3257 285 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 85 226 - -
Alju03g3257 285 Pfam Core histone H2A/H2B/H3/H4 86 188 IPR007125 GO:0003677
Alju03g3257 285 MobiDBLite consensus disorder prediction 266 285 - -
Alju03g3257 285 FunFam Nuclear transcription factor Y subunit gamma 90 203 - -
Alju03g3257 285 SUPERFAMILY Histone-fold 93 197 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3257 Alju-ChrAlju03 56731378 56733539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3257 29 271 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.295 2.22e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Alju03g3257 CBFD_NFYB_HMF 6.8e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g3257 03 56731378 56733539 Alju03g3257 03 56731378 56733539 CCT
Alju03g3257 03 56731378 56733539 Alju03g3257 03 56731378 56733539 ECH