Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3227 ATGTCAAACATAACGAGCTGTGACAGTGGTGGGAGTTTCTGCAGAGAGAATAGCAGAGAAGATGGAGCTATTATTAAACAGCATCATCCTCAACATTCTTCTGCTCATCATCATTACCAGTTTCATAGTCCCACTTCTCTTACTTCAACTACCACTAACAGTAACGGTTCTAACGCCAATTCCCAACTGCCTCCTCCTCCTCCTGCTGTTAAGAAGAAAAGAAGCCTCCCAGGAAACCCAGATCCAAGTGCTGAAGTGATTGCTCTATCACCAAGCACTTTGATGGCGAGAAACCGATTCGTATGTGAAATCTGCAACAAAGGATTCCAAAGGGATCAGAATCTGCAATTACACCGGCGAGGCCATAACCTGCCATGGAAGCTCAAGCAAAGGCCCACCACTGAAGTTCGAAAGCGCGTTTACGTTTGTCCAGAGCCTTCCTGCGTCCACCATAACCCAAGTCGAGCACTGGGTGACCTCACTGGCATCAAAAAGCACTTCTCAAGAAAACACGGCGAGAAGAAATGGAAGTGCGAAAAATGCTCCAAGAGATACGCAGTCCAGTCCGACTGGAAAGCCCATTCCAAGATCTGTGGTACTAGGGAATACAAATGTGACTGTGGCACCGTATTCTCCAGACGAGATAGCTTTATCACCCATCGAGCTTTCTGCGACGCGTTGGCCGAGGAGAATAATAAAGCCAACAATGAAGGACTACTAGGGCCAAAATTATCGGGTCCAAATTCAAACTCACTAGGTCAACTTCAAATCCCAAATAATCCTGTTTCTTCATTGCCACTCAACTCCAACTTCATCAGCCCACAAAACGGGACGCCCCACTATAACCATTGTGATGAATTTAAGCATCCACTATCACACCTTCATCAGGAGCTTTTGGAATTTCCAGCAAAACCATTCAACTACATGACTGGAAGCGTATTCGCAAGAAGCCTTTCGTCAAACAGTTCCTGTTCATCACTTCAACTGGGTTCAACTAGTTCCCTGAGCATGTTGGAAGAAAACGAGCACCAGCCAGGTGGATCGGCCCACATGTCAGCCACGGCATTGTTGCAGAAAGCAGCTCAAATGGGAGCAACCATGAGTGACAGTAACAGCTCGTGCATGGCACCCCCATCATTGGGACACAATAATAACAACCACCACTACTTCATGAACAGTGGCCAAGCTCATATGTCATCATCTCAGTATTTCAGCGGAAATAATAATAATAGCTTCGGGATGAACAGTGTGGATATGTTCAATGCTATAATGGACCAAAGCAAGGCGTTGTCGAAGATGATAGAGCAGAACAGCAGAAGCAATAATAATATGAATAACAGTGGAGTTTTGCATGGTAAAGGAAGTGGGGATGTAACGACACTGGACTTGTTGGGGATTGGAGGAGGAGGTGGTGGTGGTGGTGCTCATGATGCTTTCCTATGGCGCCAAGCAGGCTGA 1458 0.463 MSNITSCDSGGSFCRENSREDGAIIKQHHPQHSSAHHHYQFHSPTSLTSTTTNSNGSNANSQLPPPPPAVKKKRSLPGNPDPSAEVIALSPSTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRPTTEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTVFSRRDSFITHRAFCDALAEENNKANNEGLLGPKLSGPNSNSLGQLQIPNNPVSSLPLNSNFISPQNGTPHYNHCDEFKHPLSHLHQELLEFPAKPFNYMTGSVFARSLSSNSSCSSLQLGSTSSLSMLEENEHQPGGSAHMSATALLQKAAQMGATMSDSNSSCMAPPSLGHNNNNHHYFMNSGQAHMSSSQYFSGNNNNSFGMNSVDMFNAIMDQSKALSKMIEQNSRSNNNMNNSGVLHGKGSGDVTTLDLLGIGGGGGGGGAHDAFLWRQAG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3227 485 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Alju03g3227 485 Pfam Zinc finger, C2H2 type 100 122 IPR013087 -
Alju03g3227 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 122 IPR013087 -
Alju03g3227 485 SMART c2h2final6 141 171 IPR013087 -
Alju03g3227 485 SMART c2h2final6 176 196 IPR013087 -
Alju03g3227 485 SMART c2h2final6 100 122 IPR013087 -
Alju03g3227 485 Gene3D Classic Zinc Finger 100 142 - -
Alju03g3227 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 466 IPR031140 -
Alju03g3227 485 FunFam protein indeterminate-domain 12-like 79 147 - -
Alju03g3227 485 MobiDBLite consensus disorder prediction 37 60 - -
Alju03g3227 485 SUPERFAMILY beta-beta-alpha zinc fingers 99 196 IPR036236 -
Alju03g3227 485 FunFam protein indeterminate-domain 5, chloroplastic-like 154 233 - -
Alju03g3227 485 MobiDBLite consensus disorder prediction 28 85 - -
Alju03g3227 485 Gene3D Classic Zinc Finger 153 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3227 Alju-ChrAlju03 56536608 56539444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3227 57 368 IDZ Gene Family AT3G50700 56.757 2.33e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju03g3227 zf-C2H2 0.0049 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1833 01 14925885 14929165 Alju03g3227 03 56536608 56539444 CCT
Alju03g3227 03 56536608 56539444 Alju03g3227 03 56536608 56539444 CCT
Alju03g3227 03 56536608 56539444 Alju03g3227 03 56536608 56539444 ECH