Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3218 ATGAGAGGCATGTATAGCATAGTATATGTATGCCCAGAGACAGTTCTAAGATTGATTGAACCACTACAGAAGCTTGCAAAAAGTCATGGTATTGCTTTATTCGCAATTGATGAAGTGCATTGTGTTTCTAAATGGGGCCATGATTTCCGGCCAGACTACAGGCGACTGTCTGCATTAAGGGAAAATTTCAGTGCTAGCAAGCTAGAATTCCTGAAATTTGATGTACCTCTGATGGCTTTGACTGCTACAGCTACCAACCTAGTTCGAGAGGATGTTTTAAAGTCACTACATATGTCAAAAGAAACAAAGATTGTTCTCACTTCCTTTTTCCGGCCTAATTTACGGTTCATTGTAAGTCATAGTAAGACATCTTCATCTTCTTATGGGAAAGATTTTCATGAGCTAGTTGAACTATATGGTAAAACGAAAAAGTCAGTTGACAAGAAAAAAGAATTTGTATCAGAGGAATCACATGATGTTTTCAATAGCTCTGATGCCAGTAGAATCTGTGAGGTTGACAGTCTTTCTCCTTATGACTTGGATGGTGACCAAGATGATTATAGTGAAGGAGATAACTGTGTATTGCATTCAAGAAGCACTAGTGGTTCTATAAATGGAAAAGAATTATCAGTTGAGTACCTGGAAAACGACATTGATGTCTTTCAAAGTGTGGATGACTGGGATGTTGCCTGTGGTGAATTCTGTGGACAACCATCTCAAAAGGAATCGAAGTTATCTAAGATTGTTGATCCACCCAATAAATCAGAAGAAATACTTAGACTTCTTAAAGAGCCTTTAGAGCAAGGACCAACTATCATATATGTACCCACCAGAAAAGAAACGCTGAACATTGCGAAGTATCTATGTGAATGTGGTGTGAAGGCTGCTGCTTATAATGCATCGCTTCCCAAATCACATCTAAGAAGGGTACACAAGGATTTTCATGAAAACACATTAGAGGTTGTTGTTGCAACAGTGGCTTTTGGAATGGGGATTGACAAATTGAATGTCAGAAGAATCATCCATTACGGTTGGCCACAGAGTTTAGAAGCCTATTACCAAGAAGCTGGTCGGGCTGGACGAGATGGTAAATTAGCAGATTGCATTCTTTATGCAAATCTATCAAGGGAACCGTCACTTTTGCCCTGTCATAGAAGTGAAGATCAGTTAAAACATGCCTATGTCATGTTGTCTGATTGTTTCAGATATGGAATGAATACCTCATCTTGTAGGGCAGAGACTCTTGTGAAGTACTTTGGAGAGGACTTCCATAATGAAAAGTGTCTCATATGTGATGTGTGTGTTGATGGACCACCTCAAATGCAAAATCTGAGAGAGGAGGCATGTGCTTTGCTACAAGCGATAGCTGAAAATTATGGACAAAGCTCTGATGTGGATGGCTTATATGATGACGATGTACATTTTGACCCTGAAGAAAGAAGAATCAAAGGGAGGCTTAGTCTTAATATGGTTGTTAGGAAGATAAGGGAGCAGTCCCAAAAATTTTTGACGACTGATATGTTATGGTGGAGAGGTCTTGCACGAGTTATGGAACAGAAAGGATACATCAGGGAGGGAGATTATAAGAGCCATGTGCAGATTAAGTACCCGGAACCGACAAATGTGGGATTGAAATTTGTCAAGTCAAATAGTGAGCAAGCTTTCTATGTTTGCCCTGAGGCAGATATGCTTCTTGCGGCGAAGAGCAACCATAGCAAACCATACTCATTCTCTGACTGGGGAAAAGGTTGGGCTGATCCTGAGATTCGTCGCCAGAGGCTCCAAAGAATGCAACTCAATAGGAAGCCATCTATGCTGCCAAGTCCTAGAAAATCCCACAAGAGAAAAGCTGGTAGGGTGAAGCTTGATCTGAGGACTTGCCGGGGGAGACTAGCTGCAAAACTCTCCAAACGTACGTGA 1920 0.4089 MRGMYSIVYVCPETVLRLIEPLQKLAKSHGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFSASKLEFLKFDVPLMALTATATNLVREDVLKSLHMSKETKIVLTSFFRPNLRFIVSHSKTSSSSYGKDFHELVELYGKTKKSVDKKKEFVSEESHDVFNSSDASRICEVDSLSPYDLDGDQDDYSEGDNCVLHSRSTSGSINGKELSVEYLENDIDVFQSVDDWDVACGEFCGQPSQKESKLSKIVDPPNKSEEILRLLKEPLEQGPTIIYVPTRKETLNIAKYLCECGVKAAAYNASLPKSHLRRVHKDFHENTLEVVVATVAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSREPSLLPCHRSEDQLKHAYVMLSDCFRYGMNTSSCRAETLVKYFGEDFHNEKCLICDVCVDGPPQMQNLREEACALLQAIAENYGQSSDVDGLYDDDVHFDPEERRIKGRLSLNMVVRKIREQSQKFLTTDMLWWRGLARVMEQKGYIREGDYKSHVQIKYPEPTNVGLKFVKSNSEQAFYVCPEADMLLAAKSNHSKPYSFSDWGKGWADPEIRRQRLQRMQLNRKPSMLPSPRKSHKRKAGRVKLDLRTCRGRLAAKLSKRT 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3218 639 Gene3D - 1 110 IPR027417 -
Alju03g3218 639 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 102 IPR014001 -
Alju03g3218 639 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 257 409 IPR001650 -
Alju03g3218 639 PANTHER DNA HELICASE RECQ FAMILY MEMBER 255 500 - -
Alju03g3218 639 SMART helicmild6 282 363 IPR001650 -
Alju03g3218 639 Pfam Helicase conserved C-terminal domain 254 362 IPR001650 -
Alju03g3218 639 Gene3D - 243 372 IPR027417 -
Alju03g3218 639 Pfam RecQ zinc-binding 384 434 IPR032284 -
Alju03g3218 639 Gene3D - 379 555 IPR036388 -
Alju03g3218 639 FunFam ATP-dependent DNA helicase 374 552 - -
Alju03g3218 639 MobiDBLite consensus disorder prediction 601 620 - -
Alju03g3218 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 374 IPR027417 -
Alju03g3218 639 FunFam ATP-dependent DNA helicase 244 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3218 Alju-ChrAlju03 56490655 56496206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3218 262 381 Eukaryotic Initiation Factors Gene Family AT5G11170 26.667 3.01e-08 54.3