Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3208 ATGTCGCTAGCACAGCCTCCAACTCCCATTGGCTCTCCCAATGAGTTTTCCCCCATGAGTAAATTCATCCAAGCCATTGCTTGTTTGACTGTCTGTAAAACCTTTGTTGACGGTGAACAAGGGAAGTCGCTGGTGAATGCAAGGATAGATGTTGAGGCTGAGGGGTTGACGGCAAGTGAAGATAAAGAAGGAAGGTCCTCTTCTGCTTCTCGAATTTTCTGCTCAGGAAGCATGAGTCGCCTGTCAAGTCGCACTATTTATGTTGGCAATCTTCCTGGTGATGTTCGTTTGAGAGAGGTTGAGGATCTTTTCTACAAGTATGGTCCTATTGTTGACATTGATTTGAAAATCCCTCCAAGACCACCTGGCTATGCTTTTGTGAAGTTTGAGGATCGTCGTGATGCTGAAGATGCTATTCGCTATCGGGATGGTTATAATTTTGATGGTTTCCGATTGCGAGTTGAATTTGCTCACGGTGGGCGGGGGTATTCATCATCCGTTGACCGTTACAGTAGTTATAGTGGTGGTAGTGGTAGCCGTGGAGCTGCCAGGCGTTCAAACTATCGTGTTCTGGTCACTGGATTACCCCCTTCAGCTTCATGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGTGATGTATGTTTCTCTGAAGTCTTTCGGGAGCGTGGTGGCATGACTGGGATCGTGGATTATACTAATTATGATGACATGAAGTATGCTATCAGGAAACTTGATGACTCAGAATTCCGGAATGCATTTTCTCGCGCATACATACGGGTGAAGGAATATGATCGACGAAGTTATTCTAGGAGTCCCAGCCGTGATTCAAGGAGGAGCTATTCTAGAAGTTATAGCCGCAGTCCTTATAGGTCACGAAGCCGAAGTCACAGTTGGAGTCAGGATCATAGTTATAGAGGCAGAGGCAGAAGTTATTCATCCAAGGTAAAACGCTCAAGACGTTCAATATCTCTTTCAAGATCCCGCTCAAGATCCAGATCTCCATATTCATCTGCTTCACCTTATAGAAGCTACAGTCCTCGCCGTAAAAGCTTGTCGCGATCCCGTTCACCTTCGGTGAGATCTGACCGCAGCAGATCTGTTGATTCTGGATATCGCTATTGA 1125 0.4596 MSLAQPPTPIGSPNEFSPMSKFIQAIACLTVCKTFVDGEQGKSLVNARIDVEAEGLTASEDKEGRSSSASRIFCSGSMSRLSSRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVKFEDRRDAEDAIRYRDGYNFDGFRLRVEFAHGGRGYSSSVDRYSSYSGGSGSRGAARRSNYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVKEYDRRSYSRSPSRDSRRSYSRSYSRSPYRSRSRSHSWSQDHSYRGRGRSYSSKVKRSRRSISLSRSRSRSRSPYSSASPYRSYSPRRKSLSRSRSPSVRSDRSRSVDSGYRY 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3208 374 MobiDBLite consensus disorder prediction 265 374 - -
Alju03g3208 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 159 IPR000504 GO:0003723
Alju03g3208 374 SMART rrm1_1 189 258 IPR000504 GO:0003723
Alju03g3208 374 SMART rrm1_1 85 155 IPR000504 GO:0003723
Alju03g3208 374 FunFam serine/arginine-rich splicing factor SR34A-like 188 265 - -
Alju03g3208 374 CDD RRM2_SF2_plant_like 188 263 - -
Alju03g3208 374 CDD RRM1_SF2_plant_like 85 155 - -
Alju03g3208 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 153 IPR000504 GO:0003723
Alju03g3208 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 252 IPR000504 GO:0003723
Alju03g3208 374 MobiDBLite consensus disorder prediction 310 327 - -
Alju03g3208 374 Gene3D - 52 187 IPR012677 -
Alju03g3208 374 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 75 357 - -
Alju03g3208 374 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 78 187 - -
Alju03g3208 374 MobiDBLite consensus disorder prediction 265 282 - -
Alju03g3208 374 Gene3D - 188 265 IPR012677 -
Alju03g3208 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 266 IPR000504 GO:0003723
Alju03g3208 374 MobiDBLite consensus disorder prediction 356 374 - -
Alju03g3208 374 SUPERFAMILY RNA-binding domain, RBD 83 256 IPR035979 GO:0003676
Alju03g3208 374 MobiDBLite consensus disorder prediction 328 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3208 Alju-ChrAlju03 56407087 56413358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3208 80 157 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 5.09e-07 49.3