Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3175 ATGGAGGATGAATCCGTAGAAAAATCTTTCTCTTCTCTTCTGCCATACATATATATATATATATATATGGACCATACTTACAGGCCGAGTGCTCATGGCCTCGCGCTCCGGGCTCCCCGCCCGGATGATTCCGGATCAGATCGCTTCTTCAAGACCCAGATCGCCAATCACCCTCTTTATCCCAACTTACTCTCCGCCTACTTAGCCTGCCAAAAGGTCGGAGCTGACCCGGAAAGAGCTTCCCTTCTTGAAGAAATAGGGCACCAACGCCCCCTCCTCCATACTCCTCCTCACACAGGCCACGACCCTGAACTCGACAACTTCATGGAATCTTACTGTGGACTTCTCCATGGATACAAAGAGGAGCTCTCCAGGCCCTTCCGCCAAGCCTCCTTGTTTCTCTGCACTATGGAATCAAAACTCACCAATCTTTGTAACGGAACATTCGCAATTTCCTCATCGGTTCCTCTCTCTGATGAGGCAAGTGGGAGTAAAGAGAAGGGACTAAGTTGTGGAGATGCAGAAGGAGGTGAAGGTGAAGGTGATGAATGTGAAGGGTGGCGTTTTGCAGGCGAGCAAGAGGTAAGAGAAATGCTGCTTCGCAAGTACAGTGGATACCTTAGCAGCTTGAGGAAGGAGTTGTTGAAGAAGAAGAAGAAGAATAAGCTTCCAAAGGAAGCGAGGATGGCTCTCCTTCAATGGTGGAACAACCACTACAGATGGCCTTATCCTACGGAAGAGGAGAAAATGAAGCTATCAGAAGTGACAGGACTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAACGGCACTGGAAACCATCCGAAGATATGCGTGTCTCCCTCATGGAAGGTGTCAGTGGTGGTGGCATAGGTTGA 888 0.4854 MEDESVEKSFSSLLPYIYIYIYMDHTYRPSAHGLALRAPRPDDSGSDRFFKTQIANHPLYPNLLSAYLACQKVGADPERASLLEEIGHQRPLLHTPPHTGHDPELDNFMESYCGLLHGYKEELSRPFRQASLFLCTMESKLTNLCNGTFAISSSVPLSDEASGSKEKGLSCGDAEGGEGEGDECEGWRFAGEQEVREMLLRKYSGYLSSLRKELLKKKKKNKLPKEARMALLQWWNNHYRWPYPTEEEKMKLSEVTGLDQKQINNWFINQRKRHWKPSEDMRVSLMEGVSGGGIG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3175 295 ProSiteProfiles ELK domain profile. 194 214 IPR005539 GO:0003677
Alju03g3175 295 ProSiteProfiles 'Homeobox' domain profile. 214 277 IPR001356 GO:0003677
Alju03g3175 295 SMART KNOX1_2 48 92 IPR005540 GO:0003677|GO:0005634
Alju03g3175 295 SMART ELK_2 194 215 IPR005539 GO:0003677
Alju03g3175 295 ProSitePatterns 'Homeobox' domain signature. 252 275 IPR017970 GO:0000981|GO:0006355
Alju03g3175 295 Pfam ELK domain 196 215 IPR005539 GO:0003677
Alju03g3175 295 Gene3D - 212 286 - -
Alju03g3175 295 MobiDBLite consensus disorder prediction 156 184 - -
Alju03g3175 295 SMART KNOX2_2 95 146 IPR005541 GO:0003677|GO:0005634
Alju03g3175 295 SUPERFAMILY Homeodomain-like 216 286 IPR009057 -
Alju03g3175 295 Pfam KNOX1 domain 51 89 IPR005540 GO:0003677|GO:0005634
Alju03g3175 295 Pfam Homeobox KN domain 234 273 IPR008422 GO:0003677|GO:0006355
Alju03g3175 295 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 282 - -
Alju03g3175 295 SMART HOX_1 216 281 IPR001356 GO:0003677
Alju03g3175 295 CDD homeodomain 226 278 IPR001356 GO:0003677
Alju03g3175 295 Pfam KNOX2 domain 98 145 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3175 Alju-ChrAlju03 56242270 56246085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3175 31 292 Homeobox Transcription Factor Family AT1G23380 49.254 1.48e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Alju03g3175 KNOX2 5e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g3175 03 56242270 56246085 Alju03g3175 03 56242270 56246085 ECH