LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g3171	ATGAAGTCACAAGCGCCGCAAAAGGAAAAAATGGGTGTGGAGACAGCATCAAGAGGAGAAACTTCATCGTTTGATTTTATGAAAAGTACTTCAGGACAATATGATTTATCAAGAAATAAAGATCCTTTTGGTAATGTCCATAGTGGTCTCACCACTGAAGATGTTCCCAATGCTGCTTCGGAAAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAATTTAAGGAAGCTATTGACTGCTATTCAAGAAGTATTGCCTTCTCACCGACAGCTGTGGCATATGCAAATAAAGCAATGGCCTTTATCAAACTCAGAAGATTTCAACAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACGGCTAGAAAAGAACTTGGGAAACTTAAAGAAGCAATGGAGGATACTGAATTTGCTCTGCGTTTGGAACCTGAAAATCAAGAAGTCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTTTTCAGAAAGCGTCTGGAGGTCTGAGAAGCTCTCTACAGGGAACTCAAAAGTTGGGAAAATCAGAGGCAAATATTGATAGGGCAACAATCCATCCTGTTCCAAACAGTACTGAAAAATCAAGGGCTGCTGACGTTCAAGATCACACAGAGAGACATAGCAGAATTAAAAAGCAAGAAATGAAGGCATCCGTTCAACATCTTGCTTCAAGGGTAGCTTCTCGAGTCATGGCTGAAGCTGGAAAAAATATAACACCACCAAATTCAGCTTATCAGTTTGAGGTCTCATGGAGAGGGTTTTCAGGTGATCCTGCCCTGCAGACTCGTCTTTTAAAGGCCATATCTCCTCAAGATTTACCAAAGATATTCAAAAATGCCTTATCTTCTGCGCTACTAATGGACATCATTAAGTGTGTGGCATCCTTTTTCACTGAAGACACAGCTCTGGCTGTCAGTTACTTGGAGCACTTGACCAAGGTTTCAAGATTTGACATGCTCATTTTGTGTCTTACATCAACAGATAAGCATGATCTGCGCAAGATCTGGGAGGAAGTTTTCTGCAGCGAGGCAACTCCAATGGAGTATGCAGAGATTCTTGACAACCTCCGATCTAAATGCTGCATTGAACATTGA	1158	0.4085	MKSQAPQKEKMGVETASRGETSSFDFMKSTSGQYDLSRNKDPFGNVHSGLTTEDVPNAASEKELGNEYFKQKKFKEAIDCYSRSIAFSPTAVAYANKAMAFIKLRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKEAMEDTEFALRLEPENQEVKKQYADIKSLYENEIFQKASGGLRSSLQGTQKLGKSEANIDRATIHPVPNSTEKSRAADVQDHTERHSRIKKQEMKASVQHLASRVASRVMAEAGKNITPPNSAYQFEVSWRGFSGDPALQTRLLKAISPQDLPKIFKNALSSALLMDIIKCVASFFTEDTALAVSYLEHLTKVSRFDMLILCLTSTDKHDLRKIWEEVFCSEATPMEYAEILDNLRSKCCIEH	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g3171	385	ProSiteProfiles	TPR repeat profile.	125	158	IPR019734	GO:0005515
	Alju03g3171	385	SMART	tpr_5	58	91	IPR019734	GO:0005515
	Alju03g3171	385	SMART	tpr_5	92	124	IPR019734	GO:0005515
	Alju03g3171	385	SMART	tpr_5	125	158	IPR019734	GO:0005515
	Alju03g3171	385	PANTHER	OS05G0129900 PROTEIN	2	228	-	-
	Alju03g3171	385	MobiDBLite	consensus disorder prediction	16	40	-	-
	Alju03g3171	385	Pfam	Tetratricopeptide repeat	93	121	IPR019734	GO:0005515
	Alju03g3171	385	SUPERFAMILY	TPR-like	56	174	IPR011990	GO:0005515
	Alju03g3171	385	Gene3D	Tetratricopeptide repeat domain	48	156	IPR011990	GO:0005515
	Alju03g3171	385	Pfam	Potential Monad-binding region of RPAP3	261	350	IPR025986	-
	Alju03g3171	385	Pfam	Tetratricopeptide repeat	62	90	IPR001440	GO:0005515
	Alju03g3171	385	ProSiteProfiles	TPR repeat profile.	58	91	IPR019734	GO:0005515
	Alju03g3171	385	MobiDBLite	consensus disorder prediction	1	40	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g3171	51	162	Calmodulin-binding Proteins	AT3G25230	32.812	8.50e-10	58.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju03g3171	03	56217056	56220784	Alju03g3171	03	56217056	56220784	ECH