Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3166 ATGAAACTAATCGCGAGTCGCTTCCTGAGGAAGAGCAGAGACCAGAGGAGACGACGCACAGAGCACAGTGGACGACGAGATGTGGCATCGCCGACGTCGGTGAAGGGCACAGAGCTCAGTCTCCGACCAGACAGTGAGAAAGGGGCCAAGGGGGTGGTCGGATTTCTTCACATTTGCTCAAGCATGCGAGGCTACACGAGAAGGAGTTCCAAGGCTAACATCATGGCCCCTCAAATCGAACCCACTGGTGCTCCAAAACAGGGCCCCTCTATTGATTCCGACACTTTTTATCACAAACTCAACCAAGTGTGGGACTCCTACGGACTTGGTCTAATTATAAATGCCCGAGAAACTCCGCTGGACTTGTTCCTCTTTTACTCGGAGGTGACCAGAAGAGGAGGTTATCATCAGGTCAGTAGAGACAAGAAATGGGATGAACTTGTTTCTGCCTTAAAGTTGGAAGGCAGTAAGGCAAACTTACCTGTTCAGCTTGAAAAGTGCTACGCTCTGCTTCTTTACCAGTTTGAGCAACTCTACCACTACAGGGATCCAGCACATAAAGCTGCGACTAACCCCACCTTAGGTCTGCTCACAAATTGCATAAGCTCAGAGAGGAAGCGTAAATATGAGGTTAGATTGTTTGAATTAGTGGACGATGAAGATGACGAGGTGCAGATAGGCACGTGCAAGGAAATGACAGGGAACGAGCTTGAAGAACAGAAAATGGTGGTATACACGTCCCCAGATGACAAGAAAGTGAAGAAACGCCGAGGTGCTCCACAGGGACATAAAACTGCGTATCAGATATTCATCAAGCAGGAATGCGCTCGGCTGAGAAGTTGTAAGGAAGCATCTGATCGCTCAAATATTCTGCACATGGCCATTGATGCGTGGAGGAATATGACTGAGACTGAGAAACAGCCTTTTGTGGAAGAAAGTAGGAAGGAAAGGGAGAGGCTGATGGAAGCAAGGAAAGCTCAAGATCAGAATGTTAAGGCAGACACTGATTTTGGTGACTATCATGAAACTCTGCAACCTGATGCAGAGAACTGCAGTGATGGCTTAGAGCTGATAATGAGCGAAGAATCAGAATCCGAAGCGCCATTAACTGTTGACATGGGATACATGCCAAGTAGAGCATGA 1143 0.4777 MKLIASRFLRKSRDQRRRRTEHSGRRDVASPTSVKGTELSLRPDSEKGAKGVVGFLHICSSMRGYTRRSSKANIMAPQIEPTGAPKQGPSIDSDTFYHKLNQVWDSYGLGLIINARETPLDLFLFYSEVTRRGGYHQVSRDKKWDELVSALKLEGSKANLPVQLEKCYALLLYQFEQLYHYRDPAHKAATNPTLGLLTNCISSERKRKYEVRLFELVDDEDDEVQIGTCKEMTGNELEEQKMVVYTSPDDKKVKKRRGAPQGHKTAYQIFIKQECARLRSCKEASDRSNILHMAIDAWRNMTETEKQPFVEESRKERERLMEARKAQDQNVKADTDFGDYHETLQPDAENCSDGLELIMSEESESEAPLTVDMGYMPSRA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3166 380 Coils Coil 310 330 - -
Alju03g3166 380 CDD HMG-box_SF 264 319 - -
Alju03g3166 380 Gene3D High mobility group box domain 250 339 IPR036910 -
Alju03g3166 380 Pfam HMG (high mobility group) box 265 325 IPR009071 -
Alju03g3166 380 SMART bright_3 91 181 IPR001606 GO:0003677
Alju03g3166 380 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 260 328 IPR009071 -
Alju03g3166 380 ProSiteProfiles ARID domain profile. 90 180 IPR001606 GO:0003677
Alju03g3166 380 MobiDBLite consensus disorder prediction 361 380 - -
Alju03g3166 380 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 81 325 - -
Alju03g3166 380 SUPERFAMILY HMG-box 242 323 IPR036910 -
Alju03g3166 380 MobiDBLite consensus disorder prediction 1 45 - -
Alju03g3166 380 Gene3D - 75 192 IPR036431 GO:0003677
Alju03g3166 380 SUPERFAMILY ARID-like 88 182 IPR036431 GO:0003677
Alju03g3166 380 SMART ARID_2 87 176 - -
Alju03g3166 380 Pfam ARID/BRIGHT DNA binding domain 93 176 IPR001606 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3166 120 338 ARID Transcription Factor Family AT1G55650 26.531 3.80e-16 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Alju03g3166 ARID 7.7e-13 CL0123