Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3140 ATGGAAGGCCAATCCAGCAGAGCAAAACGGAGCCCGACTTGCAAGAGTTTACCATCTCACACTCACAGTGCCAAGATTCGAGATAAAGATGCCACCGACGTCCAGATGAGAAAGTTCGGGGATTTAGACTCTGGATTGAATGATATTTCGATGTCAGTACCAACCGGCGAAGTTGATTTGAGCCCAGATGAAGGCACTTCTTGGATGAATTATACCCTAGATGACTTCTTTCAAGATGACTATAATTCTGAGTTTTTTCATGAACCGATTGGGGACACTGTAAATGAGACCCCTCCCTCAGTTAATCCTTATCTAAGGGATAAAAAACATAACTGCAATAGGGAATTTAGCGACTGCCATAATAATCCTTGCAGTGCCACCCAGCATTCACATTCCAGGGAAATCACCGAGATTCCATCTACCTCTGGTGGTTTCTCTAGCTTAAAGATTCATAAGAATGACCCGATAACACCTAGTACTAGTTCCACTTCCACCATAATCAACTTCCCCCACTTTGCAAGATCTGCTGCTATCGTGAAAGCCAATCTTCAGAGCATGAGTACGATGTCTGGTTTATCTTTAGCAAGATCAGAAAGCATGTTACATATGATTAAAGGTGCTGCCACAACTAGCGGCAATCCTCCTGAATCAGCATTTATTATTCCCAAGAGTGAACATCCAGGGGAGTCAAATATGCACTGCCAACAAGCGTTGGTTTCCTTCAAGTATGATTTGGAAACGTTGGGATTGAAATCTCTGGAACAGAAAGGCGCCACTTCTGAACAGTTGAATCATGCCCGCAAAAAAGATACCTTTAAGGATGATCAGACTTTTGATCAAGTTCTTGCTGAGAGTGGCACTAAAGGACATACAACTCATGAAAAAAGCATAGAGCAGGCAGTTGCCTCTTCCTCTGTTTGCTCTGGCAATGTCTCGGAGATGTTTTCAGACAACTCAAATCAAAATTTGAAGCCAAGAAGTCGAGACACCGAGGGATCTGAGGGTCACAGTGAAGATGTTGAGGAAGAATCAGCCTTTGCCAGAAAGGCTGGTCCTGCACGGGGAGGTACAGTTTCCAAGAGAGCCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAAATGCGTGCTTTGCAAGAGCTCATACCCAACTGCAACAAGGTGGACAAAGCTTCAATGCTGAATGAAGCAATTGAGTATCTGAAGACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAACTGGTTTATACGTACCTCCAATGATGTTACCCCATGGAATGCAGCATATGCATTCACCTATGTCTACATTTCCATCTATGGGTGGTTGCATGCCAATGGGGTTAGGAATGGGATATGCTATGAGGATGCCTAATATGAGTGGTGGGTGTTCTAGATTTCCAATGATTCAGGTGCCCCAAATGCAAGGAACTCACATTTCTGTTCCCTCTATGTTCGGGGCCACTGCTTTTCATGGGATGGCAAGATCAAATCCTCAGATGTTTGGGTTATGTAGTCAGGGATTTCCTTTGTCAGGAGCGCCTCTCATGAACCCATCAACTTTGGGACTAAATGCTTCAGACTCTGGCTTGAAGGGTCCTATGCAAGGCACTGGCGGCAGTAACCCAACAAGGGATATTTCTACCCAGTGTGAAGCAGCAAATGTTGGACTAGAGGAATCAACTTTTGTACGTAATAGTGGTCATGCCTAG 1737 0.445 MEGQSSRAKRSPTCKSLPSHTHSAKIRDKDATDVQMRKFGDLDSGLNDISMSVPTGEVDLSPDEGTSWMNYTLDDFFQDDYNSEFFHEPIGDTVNETPPSVNPYLRDKKHNCNREFSDCHNNPCSATQHSHSREITEIPSTSGGFSSLKIHKNDPITPSTSSTSTIINFPHFARSAAIVKANLQSMSTMSGLSLARSESMLHMIKGAATTSGNPPESAFIIPKSEHPGESNMHCQQALVSFKYDLETLGLKSLEQKGATSEQLNHARKKDTFKDDQTFDQVLAESGTKGHTTHEKSIEQAVASSSVCSGNVSEMFSDNSNQNLKPRSRDTEGSEGHSEDVEEESAFARKAGPARGGTVSKRARAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLNEAIEYLKTLQLQVQMMSMGTGLYVPPMMLPHGMQHMHSPMSTFPSMGGCMPMGLGMGYAMRMPNMSGGCSRFPMIQVPQMQGTHISVPSMFGATAFHGMARSNPQMFGLCSQGFPLSGAPLMNPSTLGLNASDSGLKGPMQGTGGSNPTRDISTQCEAANVGLEESTFVRNSGHA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3140 578 MobiDBLite consensus disorder prediction 1 20 - -
Alju03g3140 578 Gene3D - 359 421 IPR036638 GO:0046983
Alju03g3140 578 MobiDBLite consensus disorder prediction 327 348 - -
Alju03g3140 578 MobiDBLite consensus disorder prediction 1 32 - -
Alju03g3140 578 CDD bHLH_AtPIF_like 363 425 IPR047265 -
Alju03g3140 578 PANTHER TRANSCRIPTION FACTOR PIF3 1 550 IPR044273 GO:0003700|GO:0006355
Alju03g3140 578 SMART finulus 369 418 IPR011598 GO:0046983
Alju03g3140 578 Pfam Helix-loop-helix DNA-binding domain 367 413 IPR011598 GO:0046983
Alju03g3140 578 MobiDBLite consensus disorder prediction 311 326 - -
Alju03g3140 578 FunFam Basic helix-loop-helix transcription factor 358 421 - -
Alju03g3140 578 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 412 IPR011598 GO:0046983
Alju03g3140 578 MobiDBLite consensus disorder prediction 311 370 - -
Alju03g3140 578 MobiDBLite consensus disorder prediction 124 146 - -
Alju03g3140 578 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 423 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3140 Alju-ChrAlju03 56030108 56032825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3140 46 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.730 3.45e-57 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g3140 HLH 7.5e-14 No_clan