Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3136 ATGGTTCTTAGATATGTTTTTGATGGGAAGCCGCCTGATCTGAAGCGGCAGGAGATGGCTAAACGGTATTCAAAGAGGGCTGAAGCTTATGAGGATTTGTCAGAGGCCATTGAGTCTGGCAACATGGAAGACATTGAAAAATTCAGTAAACGGACAGTCAAGATGACAGAACAGCATAGTGAAGGTTGTAAAAGACTTTTATCACTCATGGGGGTGCCTGTTATAGAGGCGCCGTCCGAAGCTGAAGCACAGTGTGCTGCACTTTGCAAATCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCATTAACGTTTGGAGCTCCTATATTTCTTCGCCATCTAATGGTTCCTAGCTCAAAGAAAGTTCCAGTTATGGAATTTGAAGTTTCCAAGATATTGGAGGAGCTAAATCTGACCATGGATCAGTTTATTGACCTATGTATTCTTTCTGGGTGTGATTATTGTGGAAGCATTCGAGGTATTGGTGGCAAGACTGCTTTGAAGCTCATTCACCAGCATAGCTGTATAGAGAACATATTGAAGAACATAGATAAAGAGAGGTACCAGATACCAGATGATTGGCCATATCAGGAGGTTAGGAAGCTTTTTAAGGAACCAACAGTCTTAGCTGAAGAAAAGCAACCAGATCTCAGGTGGACTGCTCCCGATGAAGAAGGTTTAATGACATTTCTGGTAAATGAGAATGGATTCAACAGAGATAGGGTGACAAAGGCGATAGAAAAAATCAAAGCTGCAAAGAACAAGTCATCACAAGGCCAATCAGAATCTGTTTATAAGCCAATGCCTAGCTATTCTACACCCATTAAACGGAAGGGGTGCAAGTGCATGCTTAGATCCTTTAAACCAGCGACTAAGCGTAAGATGTTATTCCCACAACTTTATAACTGGTCAAGGCCCATGGTTTTCGGCAACCTGAGCATTGCCCGCGCAGGTTTCAAGCTATCTGTCATGATATAG 984 0.4258 MVLRYVFDGKPPDLKRQEMAKRYSKRAEAYEDLSEAIESGNMEDIEKFSKRTVKMTEQHSEGCKRLLSLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPIFLRHLMVPSSKKVPVMEFEVSKILEELNLTMDQFIDLCILSGCDYCGSIRGIGGKTALKLIHQHSCIENILKNIDKERYQIPDDWPYQEVRKLFKEPTVLAEEKQPDLRWTAPDEEGLMTFLVNENGFNRDRVTKAIEKIKAAKNKSSQGQSESVYKPMPSYSTPIKRKGCKCMLRSFKPATKRKMLFPQLYNWSRPMVFGNLSIARAGFKLSVMI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3136 327 CDD PIN_FEN1 5 253 - -
Alju03g3136 327 ProSitePatterns XPG protein signature 2. 71 85 IPR019974 GO:0016788
Alju03g3136 327 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 5 289 IPR006084 -
Alju03g3136 327 SUPERFAMILY PIN domain-like 4 155 IPR029060 -
Alju03g3136 327 SMART xpgineu 68 140 IPR006086 GO:0004518
Alju03g3136 327 Pfam XPG I-region 71 155 IPR006086 GO:0004518
Alju03g3136 327 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 140 275 IPR036279 -
Alju03g3136 327 Gene3D - 2 143 - -
Alju03g3136 327 Gene3D - 144 207 - -
Alju03g3136 327 Hamap Flap endonuclease 1 [fen]. 1 268 IPR023426 GO:0016788
Alju03g3136 327 CDD H3TH_FEN1-Euk 143 211 - -
Alju03g3136 327 SMART HhH_4 142 175 IPR008918 GO:0003677|GO:0003824
Alju03g3136 327 FunFam Flap endonuclease 1 140 207 - -
Alju03g3136 327 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 67 84 IPR006084 -
Alju03g3136 327 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 145 160 IPR006084 -
Alju03g3136 327 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 3 22 IPR006084 -
Alju03g3136 327 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 88 108 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3136 Alju-ChrAlju03 56000195 56003790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3136 5 305 Core DNA Replication Machinery Family AT5G26680 74.419 8.37e-172 481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g3136 03 56000195 56003790 Alju03g3136 03 56000195 56003790 ECH