Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3134 ATGATGCATGTGGGTTTACATTACTTTGGAAGAAGACGCACAAAGCGTGGGTATGAAAAGCTAAGTGAAGATCAAAAGTTGGGGAGGGCAAGAAGGCGATGGGTCAAATTTGGAAGAGTAAGAGGCCTTCGAATATGGCGATCGAGAAAGATTTCTGTGAAGCTGTTTTCTTCGGCTCTGACGCCTACCAGAATAGTGAGAATGTACAATGAGGTTGTGAGGCGAACAAACCTGGAAGGCACGTGTCCCGTCCTTATTCTACCCACTTACTGGGGTCTCCCCGTTTTTTCTCATCCTTCTCTTGCTCTTGAATGTCTAATTCTGGTTAGGGCAAAGAAGCAGCATTCATCTTGTTGTTGGATGGGAAAGCATATGGGGAAGGCAAAGCGTCATTTCATGAGAGCCAAGAATAGAACAAAGTCTCCTGCAAATACGAATACAAGTTCAGGAGGATTTTTCCTTCCTCTTGAGAGTGACGTGGGTTTTTCCTCTGTTTTACTGCTTCAATGGATATTTTTGCCAAATAAGGAAGCGACACACCAATCAACGGAATCTCACACAGAGAGCGTAGGAAAAGCCAGCAGTGTGAACTCTGAAAGCTTTATATATGGGAGAGGATCAATGGTCTGTATTGGCAGATTCAGAAATCAAAGCTTCCCAATTCGCCGTATCTTCTATTTAAGTTCTGATCGTCACTGGTTAGGCAAGTGTGAATTACTTTATCAGGCTTTGCTCCTTGAAGCTCCTCGAGTTCACGGGAAAATGTCTTCGTCAAGGCGTAGCCAATCGTCCAGCAATAATTCAGGAAGATCAAGGCATGGTGCTAGGATCATTGCTCAGACCACTGTGGATGCAAAACTTCATGCTAATTTTGAGTCTGGCAGCTCCTTTGACTACTCCAGTTCAGTGCGTGTTTCAGGTGCCCTTAGTAATGGAGAGCATCAGACAAGTGCTGACAGAGTAACAACAGCTTACCTCCATCACGTACAGAAAGGCCTACTGATCCAGCCTTTTGGCTGCTTGCTGGCCTTAGATGACAAAACATGCAGGGTCATTGCCTACAGTGAGAATGCACCTGAAATGCTTACCATGGTCAGTCAAGCCGTGCCAAATGTTGGTGACCACCCTGCTCTTACGATGGGGACTGACATTAGAAGCATTTTCACTGGCCAAGGTGCTTCTGCCTTGCAGAAGGCAATAGGATTTGGGGAGGTTTCACTTCTTAACCCCATCCTTGTCCATTGCAAGACTTCTGGGAAGCCTTTTTATGCGATAGTCCATCGTGTCACTGGTAGTTTGATCGTTGACTTTGAGCCCGTCAAGCCTTATGAAGTTCCCATGACTGCAGCAGGCGCCCTCCAATCGTACAAGCTTGCCTCCAAAGCAATTGAACGGTTACAAGCATTGCCTAGTGGGAGCATGGAAAGGCTCTGTGATGTAATGGCTCATGAGGTTTTTGAGCTCACAGATTATGACAGGGTGATGGTGTATAAATTTCATGAAGATGAACATGGAGAAGTGGTATCTGAGGTAAAAAAGCCAGGCTTAGAGTCATATATGGGCTTGCATTATCCAGCCACTGATGTTCCACAGGCTACGAGATTTTTATTCATGAAGAACAAGGTTCGTATGATAGTTGATTGTCGGGCAAAACATGTGAAGGTGCTTCAAGATGAAAACCTTCCATATGATTTAACCTTCTGTGGTTCCACCTTGAGGGCCCCTCATAGTTGCCATGTGCAATATATGCAGAACATGGATCTAGTTGCGTCCCTGGTTATGGCAGTTGTGATCAATGACAGAGATGAAGATGGAGACAGCTCTGATTCTGTACAGCCACAGAAGAGAAAGAGGCTCTGGGGCTTAGTAGTTTGCCATAACTATACCCCTCGGTTTGTTCCTTTTCCTCTTAGGTATGCATGTGAGTTCCTGGCTCAAGTATTTGCTATTCATGTTAACAAAGAAATAGAGTTGGAATATCAGATTATTGAGAAGAACATCCTGCGAACCCAGAGTCTCCTGTGTGATATGCTGATGCGTGATGAACCCCTAAGGATTATATCACAGAGCCCAAATATAATGGATCTTGTTAAATGTGATGGAGCTTGCCTCTTATATAATGAAAAGGTACGGGGATTAGGAGTAACACCAAGTGAATCCCAGATACGAGAGATAGCTTCATGGCTGTCAGAGTGTCATAAGGATTCCACTGGTTTTAATACAGATAGCTTGTCTGATGCAGGGTTTCCTGGGGCTGCTGCTCTTGGTGATATGGTGTGTGGAGTGGCAGCCGTGAGAATATCCTCCAAAGACATGGTCTTTTGGTTTCGGTCACATGCTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATCAACCTGGTGAAGAGGATGATGGTAGAAGGATGCATCCAAGATCATCATTCAAGGCGTTCCTTGAAGTGGTGAAATCAAGAAGTTTGCCATGGAAAGACTATGAAATGGATGCTATCCACTCTTTGCAGCTCATACTGAGAAATTCATTCAAAGAGACACAGATAATGGACACGAGCACAAATGCAATCAACACAAGATTAAGTGTTCTGAAAATTAAAGGAATGCAAGAACTGGAAGTAGTGACAAGTGAGTTGGTTCGGTTAATCGAAACAGCAACTGTACCAATTTTAGCAGTTGATGTTGATGGACTGGTCAATGGGTGGAATTCAAAAATTGCTGAGTTGACATGTCTTCCAGTCGATGAAGCTATTGGAAAGCATTTGCTCACACTTGTTGAAGATTCTTCAGCTGATAGAATCAAGAATATGCTTGCCATGGCACTGCAAGGTGAAGAAGAGCAGAATGTACAATTTGAGATCAAGACACATGGTTCTAAGGCTGACACTACTCCAATCAGCTTAGTAGTTAATGCCTGTGTAAGTAGGGATCTTCAAGACAATGTTGTTGGGGTTTGTTTTGTGGCTCAAGATATAACTGCTCAGAAGACAGTTATGGATAAATTCACTCGAATTGAAGGTGACTACAAGGCCATTGTACAGAACCCAAATCCTTTGATTCCCCCAATATTTGGTATAGATGAATTTGGCTGGTGTTGTGAATGGAATCTGGCTATGGCAAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGAATAAGATGCTTTTAGGAGAAGTGTTTGGTACCCAGATGGTTTGTTGTCGTCTCAAGAATCATGAAGCTTTTGTTAACTTTGGTATTGTACTTAATAAAGCCATGACTGGTTTGCAAACGGAGAAAGTTGCTTTTGGTTTCTTTGCTCGGAATGGCAAGTATGTAGAATGCCTGCTTTCTGTGAGTATGAAATTGGATTCAGAGGGAGCAATTACTGGGGTCTTCTGCTTCTTGCAGCTAGCAAGCCCAGAGCTGCAACATGCATTACATATTCAGCGCCTTTCTGAAAAAACTGCCATGAAGAGACTAAAAGCTTTAACTTACATGAAAAGGCAGATTTGGAATCCTTTATGCGGGATTATGTTCTCCCGTAAAATGTTGGATGATACTGAATTAGGAACTGAACAGAAACAGCTTGTGCGCATTAGTGCTCAGTGCCAGCGCCAACTGAGAAAAATCCTTGATGACTCAGATCTTGACAGCATCATTGATGGGTACGTGGATCTGGAGATGGTAGAATTCACTCTGCACGATGTATTGATTGCCTCCTTTAGTCAAGTGATGAAGAAGAGCAATGCAAAGGGTATAGGAATAGTGAATGAAGTTGAAGATCGCATCAGGGCAGAAATCTTATATGGCGATAATCTGAGACTTCAGCAGATCCTTGGTGATTTCTTATCCATTTCCATCAGTTTTACACCGCCTGGGGGTCAGGTTGTTGTGGCGGCCTCTCTCACCAAAGATCAATTAGGAAAATCTATCCAGCTTGCCAATTTGGAGCTCAGCATAACACATGCTGGTAGTGGGGTGACAGAAGCATTGCTGAACCAGATGTTTGGGAGTGATGGACATGAATCTGAGGAGGGTGTTAGCCTTCTCATCAGCAGGAAGTTGCTGAAGCTCATGAATGGAGATGTGCGTTACCTTAGGGAAGAAGGCAAATCATCTTTCATCTTATCTGTTGAACTCGCCGTGGCCCACAAGTGA 4131 0.4382 MMHVGLHYFGRRRTKRGYEKLSEDQKLGRARRRWVKFGRVRGLRIWRSRKISVKLFSSALTPTRIVRMYNEVVRRTNLEGTCPVLILPTYWGLPVFSHPSLALECLILVRAKKQHSSCCWMGKHMGKAKRHFMRAKNRTKSPANTNTSSGGFFLPLESDVGFSSVLLLQWIFLPNKEATHQSTESHTESVGKASSVNSESFIYGRGSMVCIGRFRNQSFPIRRIFYLSSDRHWLGKCELLYQALLLEAPRVHGKMSSSRRSQSSSNNSGRSRHGARIIAQTTVDAKLHANFESGSSFDYSSSVRVSGALSNGEHQTSADRVTTAYLHHVQKGLLIQPFGCLLALDDKTCRVIAYSENAPEMLTMVSQAVPNVGDHPALTMGTDIRSIFTGQGASALQKAIGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIVDFEPVKPYEVPMTAAGALQSYKLASKAIERLQALPSGSMERLCDVMAHEVFELTDYDRVMVYKFHEDEHGEVVSEVKKPGLESYMGLHYPATDVPQATRFLFMKNKVRMIVDCRAKHVKVLQDENLPYDLTFCGSTLRAPHSCHVQYMQNMDLVASLVMAVVINDRDEDGDSSDSVQPQKRKRLWGLVVCHNYTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQSLLCDMLMRDEPLRIISQSPNIMDLVKCDGACLLYNEKVRGLGVTPSESQIREIASWLSECHKDSTGFNTDSLSDAGFPGAAALGDMVCGVAAVRISSKDMVFWFRSHAAAEIRWGGAKHQPGEEDDGRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNSFKETQIMDTSTNAINTRLSVLKIKGMQELEVVTSELVRLIETATVPILAVDVDGLVNGWNSKIAELTCLPVDEAIGKHLLTLVEDSSADRIKNMLAMALQGEEEQNVQFEIKTHGSKADTTPISLVVNACVSRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGIDEFGWCCEWNLAMAKLTGWKREEVMNKMLLGEVFGTQMVCCRLKNHEAFVNFGIVLNKAMTGLQTEKVAFGFFARNGKYVECLLSVSMKLDSEGAITGVFCFLQLASPELQHALHIQRLSEKTAMKRLKALTYMKRQIWNPLCGIMFSRKMLDDTELGTEQKQLVRISAQCQRQLRKILDDSDLDSIIDGYVDLEMVEFTLHDVLIASFSQVMKKSNAKGIGIVNEVEDRIRAEILYGDNLRLQQILGDFLSISISFTPPGGQVVVAASLTKDQLGKSIQLANLELSITHAGSGVTEALLNQMFGSDGHESEEGVSLLISRKLLKLMNGDVRYLREEGKSSFILSVELAVAHK 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3134 1376 Pfam PAS fold 1005 1127 IPR013767 GO:0006355
Alju03g3134 1376 Pfam PAS fold 875 989 IPR013767 GO:0006355
Alju03g3134 1376 Gene3D - 454 817 IPR029016 -
Alju03g3134 1376 ProSiteProfiles PAS repeat profile. 1005 1057 IPR000014 -
Alju03g3134 1376 PANTHER OS08G0260000 PROTEIN 322 1210 - -
Alju03g3134 1376 SMART pas_2 1004 1074 IPR000014 -
Alju03g3134 1376 SMART pas_2 874 940 IPR000014 -
Alju03g3134 1376 CDD PAS 1016 1127 IPR000014 -
Alju03g3134 1376 SUPERFAMILY GAF domain-like 453 653 - -
Alju03g3134 1376 Gene3D PAS domain 1018 1130 - -
Alju03g3134 1376 NCBIfam PAS domain S-box protein 877 995 IPR000014 -
Alju03g3134 1376 SUPERFAMILY PYP-like sensor domain (PAS domain) 1019 1125 IPR035965 -
Alju03g3134 1376 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 473 646 IPR016132 -
Alju03g3134 1376 FunFam Phytochrome 868 999 - -
Alju03g3134 1376 SUPERFAMILY PYP-like sensor domain (PAS domain) 876 985 IPR035965 -
Alju03g3134 1376 CDD PAS 883 989 IPR000014 -
Alju03g3134 1376 Pfam PAS fold 324 440 IPR013654 GO:0006355
Alju03g3134 1376 SMART HKATPase_4 1261 1373 IPR003594 -
Alju03g3134 1376 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1211 1365 IPR036890 -
Alju03g3134 1376 ProSiteProfiles Histidine kinase domain profile. 1156 1375 IPR005467 -
Alju03g3134 1376 Gene3D PAS domain 864 1003 - -
Alju03g3134 1376 Gene3D - 661 834 IPR043150 -
Alju03g3134 1376 ProSiteProfiles PAS repeat profile. 872 942 IPR000014 -
Alju03g3134 1376 FunFam Phytochrome 661 790 - -
Alju03g3134 1376 PRINTS Phytochrome signature 771 790 IPR001294 GO:0006355|GO:0009584
Alju03g3134 1376 PRINTS Phytochrome signature 967 984 IPR001294 GO:0006355|GO:0009584
Alju03g3134 1376 PRINTS Phytochrome signature 894 909 IPR001294 GO:0006355|GO:0009584
Alju03g3134 1376 PRINTS Phytochrome signature 987 1007 IPR001294 GO:0006355|GO:0009584
Alju03g3134 1376 PRINTS Phytochrome signature 388 410 IPR001294 GO:0006355|GO:0009584
Alju03g3134 1376 PRINTS Phytochrome signature 488 507 IPR001294 GO:0006355|GO:0009584
Alju03g3134 1376 PRINTS Phytochrome signature 573 594 IPR001294 GO:0006355|GO:0009584
Alju03g3134 1376 PRINTS Phytochrome signature 804 822 IPR001294 GO:0006355|GO:0009584
Alju03g3134 1376 PRINTS Phytochrome signature 686 706 IPR001294 GO:0006355|GO:0009584
Alju03g3134 1376 PRINTS Phytochrome signature 875 891 IPR001294 GO:0006355|GO:0009584
Alju03g3134 1376 SMART gaf_1 473 666 IPR003018 GO:0005515
Alju03g3134 1376 Gene3D PAS domain 334 576 - -
Alju03g3134 1376 Gene3D - 1187 1366 IPR036890 -
Alju03g3134 1376 MobiDBLite consensus disorder prediction 255 275 - -
Alju03g3134 1376 Pfam GAF domain 474 656 IPR003018 GO:0005515
Alju03g3134 1376 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1261 1371 IPR003594 -
Alju03g3134 1376 ProSitePatterns Phytochrome chromophore attachment site signature. 573 582 IPR013516 -
Alju03g3134 1376 SUPERFAMILY PYP-like sensor domain (PAS domain) 334 441 IPR035965 -
Alju03g3134 1376 Pfam Phytochrome region 669 844 IPR013515 GO:0006355|GO:0009584
Alju03g3134 1376 SUPERFAMILY GAF domain-like 664 843 - -
Alju03g3134 1376 ProSiteProfiles PAC domain profile. 945 1001 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3134 Alju-ChrAlju03 55986414 55995580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3134 255 1376 Histidine Kinase Gene Family AT1G09570 74.466 0.0 1748
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0336 01 2536549 2540652 Alju03g3134 03 55986414 55995580 CCT
Alju03g3134 03 55986414 55995580 Alju03g3134 03 55986414 55995580 ECH