Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3131 ATGTCTTCTGTAATAGGCGTTTCGTCTATATACCAGACTCCGTCTCTGGAACTTTATAAAAGAGCTACAACATCAACAGGTGGTACCACCTCCCTTTCGTTCCAATTTTCTGACAACAAGTCCCACTTTAACAGCGTTCTGAGAGCCCACCTCAGTAACAATGGCTGCGGAAATTTTAAGAGTGAGACTAAACCCAGAGCTAGTTTTGTTCCTTCTTCGATTGCCACGCCCAATTCTTCCGTTCTGAGTGAAGAAGCGTTCAAGGGCTTAGGCGGGGGTTTCTCCGACAAAGACCCTTTGGATGATGTTACTGAAAACGATGACTATGGCTATGACTCTAAATCTGAGGCCTTTTCAGCTGTTGACAGCGAGGAGGAGCTCGACATTTCCAGGCTGGACTTGCCTTCGCGCCTTGTGGAATCACTCCAGCAACGTGGGATTACTCATCTTTTCCCCATTCAGAGAGCTGTTTTAGTGCCGGCCCTCCAAGGTCGAGATCTTATTGCTCGAGCAAAGACTGGGACTGGAAAGACATTGGCATTTGGGATTCCAATTATTAAAGGACTCACTGACGATGAACAAAGAACCTCCCAGAGACGATCTGGTCGTCTTCCCAAAGTATTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAAGAGATCAAAGAATCTGCACCCTATTTGAGCACAGTTTGTGTTTATGGGGGCGTTTCGTATGTTACCCAACAAAATGCACTTTCTCGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATCGACCTGATAAACGGGAACAGTCTTAAACTGAGTGAAGTGAAATATTTGGTCCTTGATGAGGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTAGAAGTAATTTTAGAGAAACTACCATCTGAACGACAGAGCATGCTTTTTTCTGCAACCATGCCTGGCTGGGTGAAGAAACTTGCCAGAAAATATTTGGACGATCCAATGACAATTGATTTGGTTGGTGAAAAAGAGGAAAAACTTGCCGAAGGGATCAAACTTTATGCAATATCAGCCACCGCCACATCTAAGCGGACAATGCTTTCTGATCTCATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACCCAGACAAAAAGAGATGCTGATGAAGTATCACTGGCATTAACAAATAGCATACCTTCTGAGGCCCTGCATGGCGACATATCTCAGCATCAGAGAGAGAGAACATTGAATGGATTTCGGCAAGGGAAATTCACAGTTCTTGTTGCCACTGACGTAGCAGCACGTGGACTTGATATTCCTAACGTTGATTTGGTTATTCACTATGAACTTCCCAATGACCCTGAGACATTTGTACATCGCTCTGGTCGTACTGGGCGTGCTGGAAAGGAAGGTACTGCCCTTTTGATGTACACCAGCAGCCAGAGGAGAACAGTTAGATCTCTTGAGCGTGATGTAGGCTGTAAATTTGAATTTATTACTCCGCCAGCTATAAATGATGTTTTGGAATCATCGGCTGACCAAGTGGTTGCCACACTTAATAGAGTTCATCCTGAATCCGTTGAGTTTTTCACCCCTACTGCACAAAAATTGATCGAGGAACAAGGAACAATTGCCCTTGCAGCTGCACTAGCACAACTAAGTGGATTTTCAAAACCTCCCTCATCCCGATCTCTTATCAACCATGAGCAGGGATGGGTTACATTACAACTGACTCGAGATGAAGGAGATTCTAGAAGGTTTTTCTCTGCAAGATCGGTCACTGGGTTTCTTTCCGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATATAATTGCAGATGAAAGGGTTCAAGGGGCCGTTTTCGATCTGCCGGAGGAGATTGCTAGAGAGTTACTGAACAAGGAAATACCACCTGGCAACACTATTTCTAAGATCACTAGGTTGCCTCCTTTGCAAGATGATGGACCTCCTAGTGATTTCTATGGGAGGTTTTCTGACAGAGATAGTAGAGGTTCTAGGGATCGGCGAGGTTTTAAAACCTCACAGAGATGGGATGGGGGCAATGGTTCTAATGATGAATTTGGTGACTCATATAGAAGGGGTGGTCGAAGTTTTAGAACCGGCAATAGCTCTCAAAAGGCAAGAAACAGTGGTGGAGGCTTTGATGAATTTGGTGATTCATATAGAAGGGGTGGCCGAAGTAATAGAACTGGCAATAGCTGGTCTCAAAAGGCAAGAAGTAACGATGATGATTGGCTAATTGGAGGTAGAAGATCTAGCAGGTCTTCATCGTCAGACAGAGGCTTTGGAGGGGCTTGCTTTAACTGTGGGCAATCTGGACATCGGGCTTCTGAATGTCCCAACAAACTCGGCTTCTAA 2391 0.4471 MSSVIGVSSIYQTPSLELYKRATTSTGGTTSLSFQFSDNKSHFNSVLRAHLSNNGCGNFKSETKPRASFVPSSIATPNSSVLSEEAFKGLGGGFSDKDPLDDVTENDDYGYDSKSEAFSAVDSEEELDISRLDLPSRLVESLQQRGITHLFPIQRAVLVPALQGRDLIARAKTGTGKTLAFGIPIIKGLTDDEQRTSQRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLKLSEVKYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLARKYLDDPMTIDLVGEKEEKLAEGIKLYAISATATSKRTMLSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSIPSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTALLMYTSSQRRTVRSLERDVGCKFEFITPPAINDVLESSADQVVATLNRVHPESVEFFTPTAQKLIEEQGTIALAAALAQLSGFSKPPSSRSLINHEQGWVTLQLTRDEGDSRRFFSARSVTGFLSDVYSPAADEVGKIHIIADERVQGAVFDLPEEIARELLNKEIPPGNTISKITRLPPLQDDGPPSDFYGRFSDRDSRGSRDRRGFKTSQRWDGGNGSNDEFGDSYRRGGRSFRTGNSSQKARNSGGGFDEFGDSYRRGGRSNRTGNSWSQKARSNDDDWLIGGRRSSRSSSSDRGFGGACFNCGQSGHRASECPNKLGF 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3131 796 FunFam ATP-dependent RNA helicase RhlE 119 338 - -
Alju03g3131 796 Pfam GUCT (NUC152) domain 556 656 IPR012562 GO:0003723|GO:0004386|GO:0005524
Alju03g3131 796 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 335 IPR014001 -
Alju03g3131 796 CDD GUCT_Hera 563 643 - -
Alju03g3131 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 490 IPR027417 -
Alju03g3131 796 SUPERFAMILY Retrovirus zinc finger-like domains 763 794 IPR036875 GO:0003676|GO:0008270
Alju03g3131 796 SMART c2hcfinal6 776 792 IPR001878 GO:0003676|GO:0008270
Alju03g3131 796 SMART ultradead3 146 352 IPR014001 -
Alju03g3131 796 CDD SF2_C_DEAD 349 478 - -
Alju03g3131 796 MobiDBLite consensus disorder prediction 664 685 - -
Alju03g3131 796 Gene3D - 128 339 IPR027417 -
Alju03g3131 796 Pfam Zinc knuckle 776 792 IPR001878 GO:0003676|GO:0008270
Alju03g3131 796 MobiDBLite consensus disorder prediction 642 773 - -
Alju03g3131 796 ProSiteProfiles Zinc finger CCHC-type profile. 777 792 IPR001878 GO:0003676|GO:0008270
Alju03g3131 796 Pfam DEAD/DEAH box helicase 151 324 IPR011545 GO:0003676|GO:0005524
Alju03g3131 796 MobiDBLite consensus disorder prediction 736 751 - -
Alju03g3131 796 Gene3D - 351 553 IPR027417 -
Alju03g3131 796 MobiDBLite consensus disorder prediction 707 721 - -
Alju03g3131 796 Pfam Helicase conserved C-terminal domain 362 469 IPR001650 -
Alju03g3131 796 FunFam Nucleolar RNA helicase II 357 547 - -
Alju03g3131 796 SMART helicmild6 389 469 IPR001650 -
Alju03g3131 796 CDD DEADc 138 336 - -
Alju03g3131 796 Gene3D - 760 795 - -
Alju03g3131 796 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 509 IPR001650 -
Alju03g3131 796 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 119 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3131 Alju-ChrAlju03 55965651 55970784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3131 102 509 Eukaryotic Initiation Factors Gene Family AT1G72730 34.272 4.42e-64 218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g3131 03 55965651 55970784 Alju03g3131 03 55965651 55970784 ECH