Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3114 ATGGGGAGGCACTCTTGCTGCTATAAGCAGAAGCTTCGCAAGGGTCTCTGGTCCCCTGAGGAGGATGAAAAACTTTTGAGACATATTACCAAGTATGGCCATGGCTGTTGGAGCTCTGTTCCTAAGCAAGCCGGCCTGCAGAGGTGTGGTAAGAGCTGTCGGCTGAGGTGGATCAATTACCTGCGGCCTGATTTGAAGAGAGGAACATTCTCCCAGGAAGAAGAAAACCTTATCATTGAACTTCACTCTGTGTTGGGAAATAGATGGTCTCAAATTGCGGCGCAATTGCCCGGAAGAACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAACTGAAGCAGAGAGGCATCGACCCTGTTACCCACAAATCACTCTCTGAGGTTCAGAACGGAGACGACAAAGACAAAGAGCTCAACGAATTGAAACTCCTCAAATCAGAAAGCCCCAATTCAGATCCCACAAAAGCCTATGCACCCACTGGGGAAGGTTGTTCCATTTTCAAGTACAACAATGGCACAAGTAACACCAATTTGCCAACCAACTGTAGCAGCAAAGGATTGCTCCCAGATGGGTTTACAACGAGCTACACCACTTCAGGGCTGATGGGTAATTTCCCACTTCAGATGAATTATACATCCACTTCTGATACCTTCTCTTCTAATTCAAACCCTTCCCAATGGTTCACCCAAACAGGAAGACCAATATTCAATATGAACTCTGAATTTGCTTCCAATTCCATTTCTACTGTTCTTGCGCCTTCACAAACTTCATATCTCGGTGTTCCCTGCGACGATATTTGTGCAGCTTCTTATGCTGAGAATGCATCTCAATCTCATTTCTGGGGATTGACGGATTCTGTAAAAGAGACCCAAATTCAAGTGCTGCAAAACCAAACAGAGGAAGCCAAGTGGGGTGATTACGTTCAAAACCCAATCTTAATGCTGCCCGTGACTCATCTGGTATCTGATAATTTTGGGGGTCATGTTGCCCCATAA 1008 0.4504 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLKQRGIDPVTHKSLSEVQNGDDKDKELNELKLLKSESPNSDPTKAYAPTGEGCSIFKYNNGTSNTNLPTNCSSKGLLPDGFTTSYTTSGLMGNFPLQMNYTSTSDTFSSNSNPSQWFTQTGRPIFNMNSEFASNSISTVLAPSQTSYLGVPCDDICAASYAENASQSHFWGLTDSVKETQIQVLQNQTEEAKWGDYVQNPILMLPVTHLVSDNFGGHVAP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3114 335 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju03g3114 335 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju03g3114 335 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Alju03g3114 335 Gene3D - 68 146 - -
Alju03g3114 335 FunFam Myb transcription factor 11 67 - -
Alju03g3114 335 PANTHER MYB DOMAIN PROTEIN 55 1 242 - -
Alju03g3114 335 CDD SANT 17 61 IPR001005 -
Alju03g3114 335 Gene3D - 11 67 - -
Alju03g3114 335 SMART sant 13 63 IPR001005 -
Alju03g3114 335 SMART sant 66 114 IPR001005 -
Alju03g3114 335 CDD SANT 69 109 IPR001005 -
Alju03g3114 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju03g3114 335 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Alju03g3114 335 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju03g3114 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju03g3114 335 FunFam MYB transcription factor 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3114 Alju-ChrAlju03 55866669 55867827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3114 1 252 MYB Transcription Factor Family AT4G01680 58.103 1.89e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju03g3114 Myb_DNA-binding 1.4e-14 CL0123