Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3110 ATGGGCAAAACCTCTAGTTCATCCTCGTCGTCGTTTAGCAGTAACAGCAACGGCCACGCCGCTTTCTCAACCGCATCTTCTCTCGAACACCTTCCCACAGATCTTACGCTTGGACTCAGTATTTCACCCACCCCAAACCTTCACTCTCGTATTTCGAGGGGGGAACCTTCAGATAAGAGGACGCTGGGAAGCAGTGGTTCACATGAAGCTGAAGTAAGTGGTCGCAGCCTCTTTGTAAAGGTGTACATGGAAGGGATTCCCATAGGCAGAAAACTGGATTTATTGGCTCAAGATGGCTACCACGAGTTAACAAAGACGCTTGAGCACATGTTTGACACTACCATTACCTTGGGCTCTGAGATGGAGGAAGTACTTCTTCAACCAGAGAGATGGCATGTGCTGACGTACGAAGATGAGGAAGGGGACTTGATCATGGTTGGAGATATCCCTTGGGAGATGTTCTTATCCACTGTCAGGAGATTGAGGATCACCAGGGTAGACGCAATCGGGTGTTAG 516 0.4903 MGKTSSSSSSSFSSNSNGHAAFSTASSLEHLPTDLTLGLSISPTPNLHSRISRGEPSDKRTLGSSGSHEAEVSGRSLFVKVYMEGIPIGRKLDLLAQDGYHELTKTLEHMFDTTITLGSEMEEVLLQPERWHVLTYEDEEGDLIMVGDIPWEMFLSTVRRLRITRVDAIGC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3110 171 Gene3D - 70 170 - -
Alju03g3110 171 MobiDBLite consensus disorder prediction 39 68 - -
Alju03g3110 171 ProSiteProfiles PB1 domain profile. 76 168 IPR000270 GO:0005515
Alju03g3110 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 166 IPR003311 GO:0005634|GO:0006355
Alju03g3110 171 Pfam AUX/IAA family 68 168 IPR033389 -
Alju03g3110 171 SUPERFAMILY CAD & PB1 domains 67 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3110 Alju-ChrAlju03 55830829 55831666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3110 80 163 B3 DNA Binding Superfamily AT4G23980 39.286 7.47e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Alju03g3110 AUX_IAA 3.9e-31 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0367 01 2790142 2790931 Alju03g3110 03 55830829 55831666 CCT
Alju03g3110 03 55830829 55831666 Alju03g3110 03 55830829 55831666 ECH