LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g3082	ATGGATCATCATCAAGTGTTAGATTACTGTAATAATATGAATAATAACATCAAGTATAGGGATGGTGAGATGGCGAGAAGCGTGTCAGATTGTGGATCGTCAGGGGGTGAAGAGGAGATGATGGGGATAAGGAAAGGGCCGTGGACGGAGGAAGAGGATGCTATTCTGGCCAACCACATCTCCCTCCACGGCGAAGGTCAATGGAACTTTCTCGCTCGCTCCGCAGGTCTGAAGCGAACGGGGAAAAGCTGCAGATTGAGATGGCTAAACTACCTGCGTCCTAATGTCCGGCGTGGCAATATAACCCTCCAAGAACAGCTCTTGATTCTTAATCTCCATTCCCGATGGGGCAACAGGTGGTCGAAGATAGCGCAAGAGTTGCCAGGGAGGACAGACAATGAGATAAAGAACTATTGGAGGACGCGGGTGGTGAAGCAGGCCAAACAAATGAAATGTGATGTGAATAGCAAACAGTTTAGAGACGCCTTGCGTTTCGTCTGGATTCCTCGCTTGGTGGAGCGCATCCAGGCATCGGCATCCTCATCGTCCTCCTCTCACACTGCATCACCCACCAGCTGCCTCTGCTATACGGAAGCCACTTCTCTGTCTGATCATTCCATGGCCAGTGGTGACGACGACACCTCCTCTCTTCCTCCTTCTGCAGAAAAACAAGCCTCCACCTCTGGGATTCATCACTTGGAATATTCCCCAGAACTCCATCCATTTGAAGAGGCCAATGCCGATTTTTGGACCTACGAAAACATATGCTTCTTGCAGCAACAGCTTGCCGATGACTCCTGA	801	0.5006	MDHHQVLDYCNNMNNNIKYRDGEMARSVSDCGSSGGEEEMMGIRKGPWTEEEDAILANHISLHGEGQWNFLARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILNLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVVKQAKQMKCDVNSKQFRDALRFVWIPRLVERIQASASSSSSSHTASPTSCLCYTEATSLSDHSMASGDDDTSSLPPSAEKQASTSGIHHLEYSPELHPFEEANADFWTYENICFLQQQLADDS	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g3082	266	Gene3D	-	102	143	-	-
	Alju03g3082	266	ProSiteProfiles	Myb-like domain profile.	40	92	IPR001005	-
	Alju03g3082	266	MobiDBLite	consensus disorder prediction	205	228	-	-
	Alju03g3082	266	SMART	sant	97	145	IPR001005	-
	Alju03g3082	266	SMART	sant	44	94	IPR001005	-
	Alju03g3082	266	FunFam	MYB transcription factor	102	165	-	-
	Alju03g3082	266	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	42	216	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g3082	266	CDD	SANT	47	92	IPR001005	-
	Alju03g3082	266	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	40	96	IPR017930	-
	Alju03g3082	266	SUPERFAMILY	Homeodomain-like	41	139	IPR009057	-
	Alju03g3082	266	ProSiteProfiles	Myb-like domain profile.	93	143	IPR001005	-
	Alju03g3082	266	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	97	147	IPR017930	-
	Alju03g3082	266	CDD	SANT	102	141	IPR001005	-
	Alju03g3082	266	Gene3D	-	45	97	-	-
	Alju03g3082	266	FunFam	Myb transcription factor	45	97	-	-
	Alju03g3082	266	Pfam	Myb-like DNA-binding domain	45	92	IPR001005	-
	Alju03g3082	266	Pfam	Myb-like DNA-binding domain	98	141	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g3082	Alju-ChrAlju03	55646136	55647167	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g3082	43	190	MYB Transcription Factor Family	AT1G48000	72.297	5.40e-78	234

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju03g3082		Myb_DNA-binding	1.6e-14	CL0123