Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3075 ATGCTGTTTATAACTGCTGTTCATGCTTGCAAGCACCAAGCAGATGAAATTCTTCTTACTGTTCTTCTAGTTGTCGAGGACAAGCATTACTTTCCTCTTCCTGAGGCCATATCGTCTGTAAGTGTTTGCTTATCTCAGTTTACAAAGCTGGAGAATCTTAATAACCACCCGGATCAAAGAGTCACCGGAAACGGCCTCCCTCCCCCCCCTCCCCCTCCCAGTCACCCAATACACCCTCATATCCATGAACCGTTTTTCAACCACTGCAACTTTCAACCGCCGGCCGGTAACTTCACTTACCCCCATGTTCCGTGCCCTCCCAATGGTTTTGCTAACCATAATCAACCTTATAACCACTTCAATCACATGAATGGCGAGTCAAACAACTCGTTCGCTGCTGGAGCACCTCCCTCTACCAATGGCAACTCTGGATATGGTTTTAACCATTCCTTGCCTCGTCTGGGGCGGAAACGAGGTTGGCATCTCACTACCCAAGGAAATCCTCCAGATCAAGTTGACGGTGCTTGTAATGTGAAACTCTACATTGCTCCAGTTCCACGAACATCGACAGAAAATGATATCCGCCTTGTGTTTGAACAACATGGAACTATAGTTGAAGTTGTTCTTTTGTGGGATAAGAAGACAGGAGAAAGACAAGGAAGTTGTTTTGTGAAATTTGCAACGTTAGATGAAGCTGAGAGGGCTATCAAAGCTTTAAGCAATCGATATACTTTTCCTGGGGAGTCATCGCCTATTGTTGTCAGATTCGCTGACCGAGGAAAAGGGCGTCTTGGGACTCGAGGGTTCTCCCAAATTATGGATAAAAAAAATCACTCAGAAGAGGTGGTGGACAAAGTGTTTGTTGGTCACATCAACAAAGAAGCTTCAAAAAAGGAAATTGAAGAAGTATTTTCTCCTTATGGACATATAGAGGACATCTTCATTGCACAATCTCGTGGATATGGTTTTGTCAAATTTTCAAACAAAGACATGGCTTTGGCAGCAATCAAAGGGCTGAACAATGCATTCACAATGAGGGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGAACCTAAGAAACCCAAGTCTGGAGAACTCAGGGTCAACCATATGCCTGGGAGTGCATTTGGTCCATGCTCTCAAGAGCCAGCAGTCTGGCTGCCACCAAACTTTGGTGATTCCATTGGAGGGAGTAATATGCCTATGGCCCCGCATCATCCCACAATTCCACACCCACAAGTTGCTCCTCATATTCAAAACTGGGAACCTGCTAATACTATGGTGCAGCAACCATTTCCTTCCAAGCAAGCACATCCACAGTCGGCTCCAGTGCTCTCCCAGTCCATGCAGGCTCAAAAGTTATCTTCTCAACCAGTTGTTACCGAGGTGCTGAAGCAGTCACATCCAACAGATTCATCAACTCAAAATATAGAGCAGCAGCTAAATTCACAGCCCTCCCAAGCCGGAGTCAGTCCTTGTGCTATTGCGGGCAGTAAATCACCAGATATGCCAGAAAGTTCTGACGAGGAAGTTTATCCAGATTGTGACTGGAGTGAACATATCTGTCCTGATGGTAATAAGTACTACTATAATTGCGTGACTTATGAAAGTAGGTGGGAGAAGCCTGAGGAATATGCCTTGTATGAGAAGAAACAAGAGCAGGAGGATCATGGCTGTCCAAATTCATTGTTGGCATCATCTTCCTGA 1710 0.4515 MLFITAVHACKHQADEILLTVLLVVEDKHYFPLPEAISSVSVCLSQFTKLENLNNHPDQRVTGNGLPPPPPPPSHPIHPHIHEPFFNHCNFQPPAGNFTYPHVPCPPNGFANHNQPYNHFNHMNGESNNSFAAGAPPSTNGNSGYGFNHSLPRLGRKRGWHLTTQGNPPDQVDGACNVKLYIAPVPRTSTENDIRLVFEQHGTIVEVVLLWDKKTGERQGSCFVKFATLDEAERAIKALSNRYTFPGESSPIVVRFADRGKGRLGTRGFSQIMDKKNHSEEVVDKVFVGHINKEASKKEIEEVFSPYGHIEDIFIAQSRGYGFVKFSNKDMALAAIKGLNNAFTMRGCDHPLIVRFAEPKKPKSGELRVNHMPGSAFGPCSQEPAVWLPPNFGDSIGGSNMPMAPHHPTIPHPQVAPHIQNWEPANTMVQQPFPSKQAHPQSAPVLSQSMQAQKLSSQPVVTEVLKQSHPTDSSTQNIEQQLNSQPSQAGVSPCAIAGSKSPDMPESSDEEVYPDCDWSEHICPDGNKYYYNCVTYESRWEKPEEYALYEKKQEQEDHGCPNSLLASSS 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3075 569 SUPERFAMILY RNA-binding domain, RBD 166 267 IPR035979 GO:0003676
Alju03g3075 569 MobiDBLite consensus disorder prediction 432 513 - -
Alju03g3075 569 SMART rrm1_1 179 255 IPR000504 GO:0003723
Alju03g3075 569 SMART rrm1_1 285 355 IPR000504 GO:0003723
Alju03g3075 569 MobiDBLite consensus disorder prediction 54 73 - -
Alju03g3075 569 SUPERFAMILY WW domain 517 549 IPR036020 GO:0005515
Alju03g3075 569 CDD WW 516 545 IPR001202 GO:0005515
Alju03g3075 569 MobiDBLite consensus disorder prediction 124 143 - -
Alju03g3075 569 SUPERFAMILY RNA-binding domain, RBD 285 369 IPR035979 GO:0003676
Alju03g3075 569 Gene3D - 171 264 IPR012677 -
Alju03g3075 569 ProSiteProfiles WW/rsp5/WWP domain profile. 518 545 IPR001202 GO:0005515
Alju03g3075 569 SMART ww_5 513 545 IPR001202 GO:0005515
Alju03g3075 569 PANTHER RNA BINDING PROTEIN 66 476 - -
Alju03g3075 569 Gene3D - 271 365 IPR012677 -
Alju03g3075 569 Pfam WW domain 517 543 IPR001202 GO:0005515
Alju03g3075 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 259 IPR000504 GO:0003723
Alju03g3075 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 359 IPR000504 GO:0003723
Alju03g3075 569 Gene3D - 514 558 - -
Alju03g3075 569 MobiDBLite consensus disorder prediction 432 494 - -
Alju03g3075 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 344 IPR000504 GO:0003723
Alju03g3075 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 247 IPR000504 GO:0003723
Alju03g3075 569 ProSitePatterns WW/rsp5/WWP domain signature. 518 543 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3075 Alju-ChrAlju03 55581012 55588919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3075 180 386 Eukaryotic Initiation Factors Gene Family AT1G49760 25.229 7.57e-11 63.2