Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3047 ATGGGAGAGGTTGTCATGTTTATTGACGATCTGAGATCTATTTCTGGGATTTCTCGATGCAGAATTTGTCATGAAGAAGAATTTGAGAGCTCAAAAAGCTTTGAAGCTCCCTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCACAGAGATTGTATACAGAGATGGTGCAATGAGAAAGGGAATACAATTTGTGAAATATGTCTCCAGCAATATGAACCTGGTTACACGGCTCCACCTCCAAAGAAATTGCAGATAAATGATGAAGCAATGACCATTCGAGATAGCCTGCAAATTTCAAGAATGGAGGAAGAAGCGCTGAATGCAAGATTAGAAGCAATAGTTGAAAGAGTGGCAATAGAAAGTGATTACTCCGAATGCACGTCTGCCGCAGATAGAAGTGCATCTTACTGTCGATTCCTGGCCTTGGCATTTACACTCTTTATGCTCGTGAGGCATCTTCTCGCTGTGCTTACGAGTGGAACAGAAGATTACCCATTTACACTTCTTACTGTTTTAATGCTAAGGGCTGGCGGAATTGTGCTGCCCATGTTCATAATTATTAGAATGATTGGAGCGATCCAAAACATAATTCAGCGCCACTACCAGGACTCTGAGGATGGAGCGGTCATCTCTGATGGATACGACAACGAAAACGGGACACTGCGTGATGTGATTTTCAGACACGCATAG 690 0.4304 MGEVVMFIDDLRSISGISRCRICHEEEFESSKSFEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYTAPPPKKLQINDEAMTIRDSLQISRMEEEALNARLEAIVERVAIESDYSECTSAADRSASYCRFLALAFTLFMLVRHLLAVLTSGTEDYPFTLLTVLMLRAGGIVLPMFIIIRMIGAIQNIIQRHYQDSEDGAVISDGYDNENGTLRDVIFRHA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3047 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Alju03g3047 229 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Alju03g3047 229 Pfam Protein of unknown function (DUF3675) 73 190 IPR022143 -
Alju03g3047 229 CDD RING_CH-C4HC3_MARCH 20 67 - -
Alju03g3047 229 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Alju03g3047 229 SMART ringv_2 19 68 IPR011016 GO:0008270
Alju03g3047 229 SUPERFAMILY RING/U-box 19 72 - -
Alju03g3047 229 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Alju03g3047 229 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 200 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3047 Alju-ChrAlju03 55404671 55406597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3047 20 67 C3H Transcription Factor Family AT5G05830 40.385 1.83e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g0443 01 3361293 3363608 Alju03g3047 03 55404671 55406597 CCT
Alju03g3047 03 55404671 55406597 Alju03g3047 03 55404671 55406597 ECH