Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3041 ATGAAAATCAAACAAAATGGAGGAAAACTTTCCCTCGCTCAAGTGAGGATTGTTTATTTGGGATCGAGCAGTTCGAATTTCGGTCTCCGAACCCCAAATTACACGTCTGATTTTTCCTCCCAAATGTTGGAGACAAGTATTCCATCGCAAGTGTTTCTCAACATTCGTTTCGTTCTCTATGGTTTTGATCCTATCAACGAAAGCAAGGTTCGATTCAATCTTGTAAATGGCGGTGGAGTTGATGTTGGTCAGTACGGTCCAAGTTGCACACATGTCGTTGTGGGCAAACTTACTTATGATGATCCTATCTGCGTTGCTGCAAGAAATGATGGGAAGACGCTCGTCACTGCTTTGTGGGTTGATCACAGTGTTGACGTTGGAATGCCAGTTGATGCCACCTCCGTCATGTATAGGCCCCTGAAAGATTTAAATGGTATACCGGGTGCTAAGAATTTGGTTGTTTGCTTGACTGGTTATCAACGTCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCTGAATTTTCTAAGCCATTGGTGGCAAGCAAAGTTACTCATCTTGTATGCTACAAATTTGAAGGAGAAAAGTATGAGCTTGCCAGTAGACTGCAGACAATTAAGTTAGTTAATCATCGGTGGTTAGAAGACTGTTTGAAGGATTGGTTGCTTCTCCCTGAAGAAAAATATAAGAAGAGTGGTTATGAACTAGAGAGGATGGCAGAAGAGGCTAAAGACTCTGAAGAAGAAGCTGAAGATCTCGTATCAGGGAAGTCTGGGGGAAGAGGCATCACTAAGAGTCCCTTTAGTTCAAAAATGAATACTGCTACAACCCATAACTCATCAAAACCTGTAGTAGTAGAATCAAATGCCTTTCCGGGTTCTGCTGCTCCTGAGGGTTCGCGGAAAGCAAATGAGGGGCATGAGCCTATATCAATTCTCAAAAATGAGAATACATCTGATCAAACCAGAAACGTCCATCATGATGTTCTAGAATCAAGTGCTGGGGATACTGGCGTTTCCAGGCGTGATGCATCTGGTCAGCTACCCGACACATGTGCCAAGACCACTAAACCTAGAAACACTTGTGTTCAAGATGCTGTTGACTGCCAGCATCTTGGCATTCCTGGAAATGCTGATTCATCAGGTCATGCTCCTGATCTTCAGGCTAGTACTTCTGTGTATGGGAAGTTGGTTAATGACTTGAGATTGACTTCTGAAAGTGTTGAAGGACATCAACGCTCAGATGTGAAGGGTAGTGTTGCAACTAGCTCTAGGAAAAACTTAAAGAGATTTTCTCCTTCAAGTGGCTTAAATGAAAACCTTGGCAATTTAAGTGAGCCTTCTGCATCACCTTTAAATAATTTAAAATTAAGAAATGACCTAGAAGCATCTTCGAACAAGGTGGAAAAGGCAAGTGACAGCATCAGCTTCGACTTTGTTGAAGGTTCTGGGAAAGGTAACCATTTTAGTATCAAGAAAAACAAGAAAGGGCCAAGTAGTTTGTTGCCTAAAAATAGGTCGATTGAAGCTTCTACTAAAGCAAATTCTATGATGACGAAAGACACAAAACTTTCCATTGAAAGATCCCCATTAGCAGATAGCAATAAACTATCAGAGATAGAACTCCATTTTCCTGTGGGGAGAGATGATATGAAGGACAAAGAATCTGTAAGCTCAGAGCCTCTGCAGGATGATGCACCCAAAATAAATGGCGAGCCTGATATTGTAGATAGTGGCAGGGAAGAAGTTGCTCAAGATGGCAATGAAACAGAACCTCATAATGCCAGGAACGATCTTGAATGCTCATATTCGAGTAAAAAGAAGTCTAGAAATGAGGAATCAACTGGTCATGCTACCCTGGATTTATGCAACAAAGTAAGTGATAAGTTGATTAGAAAATCGCCCCGCAAGAAGACAGTTGCCAAGAAATGTTTGGGTTCTAGACCTAAATTAGGTGCTACTGCTAAAAAGAAGAGTTTGATTTCGTTAGATGAAAGTACCCCTCAAGCTGATGGCGCAGGTTGTTTAAGTGGATGGAAAGAGACGGCACTTTGTGATGGCAAGAAACTTGTTAAATCCTCCAAAATTGTTAGTGTTGAAACATCAATGGAGCAGGAGAGCGTTTGCAAATCTGCAGAAAATACCAATGGCAGAGAATTTCAGGATGAAGAAACAGAGGCTCCGGATGAAAAAACTGAGTACAAGGGACTGACAGTTGATGAAGACAATCGTGAATCAGTTAATATTTTGAAAAAATCTGTTACGCAGACAGAAGAGAAGTTCGGAGCAACTCACCATGCATCAGAATCTAAATCAAAGCCTCCAAAGGAAGGTACAAATGGAACTAAACCGGTGGAACTTGAGCTGGTAGACTCAACCTCTAAAGGAAAAGGAAAGCCTAAAGGCAGAAAACTTACTGAAGGCAGAACCAAGAAAGCCCCATTTACCAAGGATACAATGAGGACTGAGGAGGCTGCGTCCTGTGAAAGAAAAGATGTGACAGATATGGAAACCATGGAAACAGCTTTATTTTCTGCTGGTAAAGATAGCAGCTCAGCAGTAAAGACAAAAGGAAGGAAAACAGGACAAATAGTGGCTCCAAAGGAAGGTACAAATGGAACTAAACCGGTGGAACTTGAGCTGGTAGACTCAACCTCTAAAGGAAGAGGAAAGCCTAAAGGCAGAAAACTTACGGAAGGCAGAACCAAGAAAGCCCCATTTACCAAGGATACAATGAGGCCTGAGGAGGCTGCGTCCAGTGAGAGGAAAGATGAGACAGATATGGAAACCATGGAAACAGTTTTATTTCCTGCTGGTAAAGATAGCAGCTCAGCAGTAAAGACAAATAGTGCAGGGAGTTTTCAGGAAGTTGAGAAGGAAAACAGGCCAATTGATGGAGAGGGTATAAACATTGGAAACTCGGTTATTAAAACTAGTGCAGGTCAAGCAAAGGTCAATCAAAAGACTCGGAAAAAAGCTCTTAGTTCATCTACATCAGAAGATAACAGAAGAGTGAAGAAAGAAGCTGCATGTTTTATAGTAAGTGGGCACCGCTTACAGAGAAAGGAGTTTCAACAATTGATTAGGCGATTGAAAGGAAGGGTCTGCCGGGATTCTCATCAGTGGTCGTATCAGGCAACACACTTCATAGCCCCAGATCCGGTACGCAGGACTGAGAAATTTTTCGCTGCTGCTGCATCGGGGAGGTGGATTCTTAAAAGTGATTACTTAACTGCCTGTAGTGAGGCCGGTAAATTCTTGACCGAAGAACCTTATGAGTGGCACAAGAGTGGCCTTAGCGAGGATGGTGCAATCAATTTGGAGGCTCCAAGAAGGTGGCGGCTTTTGAGAGAGAAGACAGGTCATGGCGTCTTATATGGAATGCGCATTATTGTATACGGCGATTGCATTGTTCCACCTTTGGATACATTGAAGCGTGTAGTCAAAGCAGGAGATGGAACTATATTAGCAACTTCTCCTCCTTACACCCGGTTCCTTCATACCGGTATTGACTATGCAGTAGTTAGCCCGGGCATGCCACGTGTGGACATGCGGGTCCAAGAATTCTTAAAACATGAAATTCCCTGCGTTTTAGCTGACTACTTGGTGGAGTATGTGTGCAAGCCCGGGTTCTCCCTGGAGAAACATGTACTGTATGGGACTCATGCCTGGGCAGAGAGGTCATTTGCTAACCTTCAAAGGAAGGCAGAAGAGATCATCGAGGATCCTCCAGAAATTGATGATAATGACACAGCTTGCCAAGTATGTGGATCTCGAGATAAAGGAGACGTAATGCTGATATGTGGTGATGAAAGTGGTTCCGTTGGTTGTGGAGTTGGCATCCATATCGATTGCTGCGATCCTCCTCTGAAAGATGTTCCTGAGGAGGATTGGTTTTGTCCTAAGTGCACTGAAACCCGAAACTGCTCTAGCTCTAACAAGAAAAGGAAAAAAGGTCTCTTGTCTTCCTCCAAGATCAAGTGTTAG 3996 0.4304 MKIKQNGGKLSLAQVRIVYLGSSSSNFGLRTPNYTSDFSSQMLETSIPSQVFLNIRFVLYGFDPINESKVRFNLVNGGGVDVGQYGPSCTHVVVGKLTYDDPICVAARNDGKTLVTALWVDHSVDVGMPVDATSVMYRPLKDLNGIPGAKNLVVCLTGYQRQDRDDIMTMVGLMGAEFSKPLVASKVTHLVCYKFEGEKYELASRLQTIKLVNHRWLEDCLKDWLLLPEEKYKKSGYELERMAEEAKDSEEEAEDLVSGKSGGRGITKSPFSSKMNTATTHNSSKPVVVESNAFPGSAAPEGSRKANEGHEPISILKNENTSDQTRNVHHDVLESSAGDTGVSRRDASGQLPDTCAKTTKPRNTCVQDAVDCQHLGIPGNADSSGHAPDLQASTSVYGKLVNDLRLTSESVEGHQRSDVKGSVATSSRKNLKRFSPSSGLNENLGNLSEPSASPLNNLKLRNDLEASSNKVEKASDSISFDFVEGSGKGNHFSIKKNKKGPSSLLPKNRSIEASTKANSMMTKDTKLSIERSPLADSNKLSEIELHFPVGRDDMKDKESVSSEPLQDDAPKINGEPDIVDSGREEVAQDGNETEPHNARNDLECSYSSKKKSRNEESTGHATLDLCNKVSDKLIRKSPRKKTVAKKCLGSRPKLGATAKKKSLISLDESTPQADGAGCLSGWKETALCDGKKLVKSSKIVSVETSMEQESVCKSAENTNGREFQDEETEAPDEKTEYKGLTVDEDNRESVNILKKSVTQTEEKFGATHHASESKSKPPKEGTNGTKPVELELVDSTSKGKGKPKGRKLTEGRTKKAPFTKDTMRTEEAASCERKDVTDMETMETALFSAGKDSSSAVKTKGRKTGQIVAPKEGTNGTKPVELELVDSTSKGRGKPKGRKLTEGRTKKAPFTKDTMRPEEAASSERKDETDMETMETVLFPAGKDSSSAVKTNSAGSFQEVEKENRPIDGEGINIGNSVIKTSAGQAKVNQKTRKKALSSSTSEDNRRVKKEAACFIVSGHRLQRKEFQQLIRRLKGRVCRDSHQWSYQATHFIAPDPVRRTEKFFAAAASGRWILKSDYLTACSEAGKFLTEEPYEWHKSGLSEDGAINLEAPRRWRLLREKTGHGVLYGMRIIVYGDCIVPPLDTLKRVVKAGDGTILATSPPYTRFLHTGIDYAVVSPGMPRVDMRVQEFLKHEIPCVLADYLVEYVCKPGFSLEKHVLYGTHAWAERSFANLQRKAEEIIEDPPEIDDNDTACQVCGSRDKGDVMLICGDESGSVGCGVGIHIDCCDPPLKDVPEEDWFCPKCTETRNCSSSNKKRKKGLLSSSKIKC 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3041 1331 Pfam twin BRCT domain 152 216 IPR001357 -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 265 283 - -
Alju03g3041 1331 Gene3D BRCT domain 35 136 IPR036420 -
Alju03g3041 1331 Gene3D BRCT domain 1006 1123 IPR036420 -
Alju03g3041 1331 SMART BRCT_7 1008 1087 IPR001357 -
Alju03g3041 1331 SMART BRCT_7 1125 1212 IPR001357 -
Alju03g3041 1331 SMART BRCT_7 147 224 IPR001357 -
Alju03g3041 1331 SMART BRCT_7 49 127 IPR001357 -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 408 456 - -
Alju03g3041 1331 Coils Coil 239 259 - -
Alju03g3041 1331 ProSiteProfiles BRCT domain profile. 150 234 IPR001357 -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 761 776 - -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 573 618 - -
Alju03g3041 1331 CDD BRCT_TopBP1_rpt7 1014 1087 - -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 847 861 - -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 545 564 - -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 705 931 - -
Alju03g3041 1331 Gene3D BRCT domain 1125 1221 IPR036420 -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 503 535 - -
Alju03g3041 1331 ProSiteProfiles Zinc finger PHD-type profile. 1253 1309 IPR019787 -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 490 621 - -
Alju03g3041 1331 SUPERFAMILY BRCT domain 48 133 IPR036420 -
Alju03g3041 1331 Gene3D BRCT domain 140 261 IPR036420 -
Alju03g3041 1331 ProSiteProfiles BRCT domain profile. 1015 1097 IPR001357 -
Alju03g3041 1331 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 570 1322 IPR044254 -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 719 751 - -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 885 931 - -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 333 355 - -
Alju03g3041 1331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1222 1310 IPR013083 -
Alju03g3041 1331 SMART PHD_3 1255 1307 IPR001965 -
Alju03g3041 1331 SUPERFAMILY BRCT domain 150 233 IPR036420 -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 793 840 - -
Alju03g3041 1331 SUPERFAMILY FYVE/PHD zinc finger 1246 1312 IPR011011 -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 419 456 - -
Alju03g3041 1331 SUPERFAMILY BRCT domain 1015 1118 IPR036420 -
Alju03g3041 1331 Pfam BRCA1 C Terminus (BRCT) domain 1017 1083 IPR001357 -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 244 283 - -
Alju03g3041 1331 MobiDBLite consensus disorder prediction 983 1004 - -
Alju03g3041 1331 Pfam PHD-finger 1256 1308 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3041 Alju-ChrAlju03 55351180 55357597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3041 170 255 Core DNA Replication Machinery Family AT4G02110 73.256 6.80e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju03g3041 BRCT 1.4e-06 CL0459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g3041 03 55351180 55357597 Alju03g3041 03 55351180 55357597 ECH