LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g3037	ATGCCGTCATTACACACTCTGAGGCTGAGACAGAAAGAGAGAGAGAGAGAGATGGGAAGAGCACCGTGCTGTGAGAAAGTGGGACTGAAAAAAGGCAGATGGAGTGCCGAAGAGGATGATATATTGACCAAATACATTGAGGCCAATGGCGAAGGCTCTTGGAGGTCCTTGCCCAAGAATGCTGGACTTTTGAGGTGTGGCAAGAGTTGCAGGCTGAGATGGATCAACTACCTGAGATCTGACCTTAAGAGGGGCAACATTACTCCTCACGAGGAAGACCTCATTATTCAACTCCATTCTTCCTTGGGCAACAGGTGGTCCCAGATAGCGAGTCACTTGCCAGGAAGAACAGACAACGAAATCAAAAACTACTGGAATTCTCACTTGAGCAGGAAAATCAACGCCTTCAGGAAGCCGGCTTGTACGGATCAGACCACCGCAGATACAGTGGTGAGCAATAATATTACCAAGCGCAAGGGTGGCAGAACCAGCCGTTGGGCCATGAAGAAGAACAGAAGCAGCAACAGCAAACAAGAGGCTACGGAGAAAGGCAATCATCATCAGGACAAAAGTGTGGCAGAAGTTCCGGAGCCACACACGCCGGCACTAGAGAACGAAGGCTTGTCCATTACAGGCGATGGCATAGACTTTGAGGATTTCATGGTGCTGGAAGGTGGCAATAACAGTACTGAAAACAAAGTAGCAGAGAGATCAGAAGAAGAAGTCGGAGAAAAGGGAGATGGTTGGTTGAGGTCAGGTGAAGACAAAGAAACCAGAGAGATGACGACACAGGAAGAGGTTATCAATGAGCAAGGCATTGATGGCGGTGGGGAGTTATGTCTTGACGACATGTTGGACACTTGGTTGCTGGAAGACGACGGAGGTGGGGTTTCCAGTTTAACTGAGGAGAGAGAAAGAAATGATGACGTGTCGTGTTTTGATTCCAAAAAGGCTCCAGCAGATCACCCACATCAGTGTACTAATAATAATACTCCGCACTCCGATTCTTGCTCTCCCTTGCCTGAATACGATTACTGGCATAATTGGGAGATTAACATGGACGACCAGTTGATGATGAATCATGATGATAACCAGTCGCACACATGGGACGACGACAAACAAGACCTCTTGTCTTGGCTATGGGAAGATGATGATTGTCAGATTGATCCTCACAAACAAAATCCCAAGCTGCCCTTTATTGTTTCTTGA	1209	0.4739	MPSLHTLRLRQKEREREMGRAPCCEKVGLKKGRWSAEEDDILTKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDLKRGNITPHEEDLIIQLHSSLGNRWSQIASHLPGRTDNEIKNYWNSHLSRKINAFRKPACTDQTTADTVVSNNITKRKGGRTSRWAMKKNRSSNSKQEATEKGNHHQDKSVAEVPEPHTPALENEGLSITGDGIDFEDFMVLEGGNNSTENKVAERSEEEVGEKGDGWLRSGEDKETREMTTQEEVINEQGIDGGGELCLDDMLDTWLLEDDGGGVSSLTEERERNDDVSCFDSKKAPADHPHQCTNNNTPHSDSCSPLPEYDYWHNWEINMDDQLMMNHDDNQSHTWDDDKQDLLSWLWEDDDCQIDPHKQNPKLPFIVS	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g3037	402	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	18	230	-	-
	Alju03g3037	402	FunFam	Myb transcription factor	28	107	-	-
	Alju03g3037	402	SUPERFAMILY	Homeodomain-like	28	125	IPR009057	-
	Alju03g3037	402	Pfam	Myb-like DNA-binding domain	84	129	IPR001005	-
	Alju03g3037	402	Pfam	Myb-like DNA-binding domain	31	78	IPR001005	-
	Alju03g3037	402	MobiDBLite	consensus disorder prediction	229	260	-	-
	Alju03g3037	402	CDD	SANT	88	129	IPR001005	-
	Alju03g3037	402	Gene3D	-	88	133	-	-
	Alju03g3037	402	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	26	78	IPR017930	-
	Alju03g3037	402	MobiDBLite	consensus disorder prediction	233	260	-	-
	Alju03g3037	402	ProSiteProfiles	Myb-like domain profile.	79	129	IPR001005	-
	Alju03g3037	402	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	79	133	IPR017930	-
	Alju03g3037	402	Gene3D	-	28	84	-	-
	Alju03g3037	402	MobiDBLite	consensus disorder prediction	152	211	-	-
	Alju03g3037	402	SMART	sant	83	131	IPR001005	-
	Alju03g3037	402	SMART	sant	30	80	IPR001005	-
	Alju03g3037	402	MobiDBLite	consensus disorder prediction	175	194	-	-
	Alju03g3037	402	ProSiteProfiles	Myb-like domain profile.	26	78	IPR001005	-
	Alju03g3037	402	CDD	SANT	33	78	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g3037	Alju-ChrAlju03	55329363	55331547	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g3037	18	169	MYB Transcription Factor Family	AT2G47460	71.429	1.29e-74	235

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju03g3037		Myb_DNA-binding	1.2e-11	CL0123