Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3031 ATGGATGTTGAGGCAGAGAAAATGTGCAGGGATTGCCTCACAAGGACTACACCTCTATGGAGGGCAGGTCTCGATGGGCCGAGGTCACTTTGTAATGCGTGCGGACTACGATTCAGAAAGAGAATGGCTCTTTGGGCACTGAATAGTGAGGTAGCACAGAAGCGCAGGAAGAGGACTCCGGCAGGCAGAGTCATGAAGAAGTTGAAAGAGGAAGAAGAAGCCGCCATATCACTGATGGCTCTCTCTGCCTAA 252 0.5119 MDVEAEKMCRDCLTRTTPLWRAGLDGPRSLCNACGLRFRKRMALWALNSEVAQKRRKRTPAGRVMKKLKEEEEAAISLMALSA 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3031 83 CDD ZnF_GATA 9 41 IPR000679 GO:0006355|GO:0043565
Alju03g3031 83 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 48 - -
Alju03g3031 83 ProSitePatterns GATA-type zinc finger domain. 9 34 IPR000679 GO:0006355|GO:0043565
Alju03g3031 83 SMART GATA_3 3 54 IPR000679 GO:0006355|GO:0043565
Alju03g3031 83 Pfam GATA zinc finger 9 41 IPR000679 GO:0006355|GO:0043565
Alju03g3031 83 ProSiteProfiles GATA-type zinc finger domain profile. 3 39 IPR000679 GO:0006355|GO:0043565
Alju03g3031 83 Gene3D - 4 74 IPR013088 GO:0006355|GO:0008270
Alju03g3031 83 PANTHER OS01G0976800 PROTEIN 5 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3031 Alju-ChrAlju03 55284109 55284472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3031 4 82 C2C2-Gata Transcription Factor Family AT5G49300 38.614 2.35e-15 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju03g3031 GATA 2.3e-15 CL0167