Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g3020 ATGGGAGAGACGAGAGAAATGGGAAGGTCATGTAAAAATGGCGTACTTGGATTCGTTACTTGGCTTGTCCCTATCCCTAATCTTCCCCCCTCGCAAGACACGTGTTTGGAGATCTCATCCTCCATCTACCCTGATGCGAGGGTCACAGTCCAATGCAGTCACACTAATATGTTTTATAAAATACACACTCCACTCAAGACCCTGCCACCAAATGATGGTGACGATGATGATGAAATGGGGGCACTGTACTTTGACAGATCTGGTTTTCCCCTGCCTCGCTTTACCCAATTTCCTTGCAGTGAAGTCATCCGCAACCAGCGATGCCCATCTTCTCGTGCCGCGTTTTGTCTTGTTGCTCATGTTATTAAGCCCACCGATGGGCGATGGGCGATGGGCGATGGGCATACAATGTGCTGGGTGTTTTATCAGCAAATGAACAGCCCATTTCTTGCCATCTTCCCTGAACCCATCCTTCTTGCTGCTTTTCAGAATGCTGCATCCACTTACCATGCTGCAGAACGGCGTCCAGACCATTTATATTATCCATGCCGGTTCCCCTGTTATTTTCAACACAGCATATCTCATTGGTTAACTTCATTCGCTTTCTCACGACTTTCAAATCCATTTGTTCATCTCTCTGAATCTGGATCAAGCATGTGTCGGGGTGCTATCATCGCTGACTTCATTCCTCGCCACCGTGGTCGCCGCCTTACCCCCTCCGACATCTGGCCCGACACATTTGGAAACCACCAGGACCTCCCCTCGGAGTTTTCTCACTCTGTTCCCCTCCAAAGCCCTCAACTTTCCACAGTGGCTGAGAAGGCCGAGAAGCCGGCCAAGAGGCAGAGGAAGAACCTTTACAGAGGGATTCGGCAGCGTCCCTGGGGTAAATGGGCCGCGGAGATTCGTGATCCGAGGAAAGGGGTTCGTGTCTGGCTCGGCACTTACAACACCGCGGAGGAAGCTGCCAGGGCCTATGACAGAGAAGCTCGTAAAATCCGCGGCAAGAAAGCCAAGGTCAATTTTCCCAACGAAGACGAGGATCGCTCTGTCCAAGCCCGTCGCAACCCACCAGCTCCACCGACAAGCCTGAACTTGGAGTTCGGTTATGATCTGAACCAAGCCGGGGCAACTTTTTCTTCCCGGCGGGGAGAGTCGGCGTCAGAGTACTCGACGATGAAGTTGTTGGAGTCGAATCAGAGAAAGGGGAGCGACGGAGGGAAGACGGAGAAGGTGGGCATAGATGGGGAGGAAGAAGAGAACCAGGCAGGGGAGCTATCGGAGGAGCTGATGGCATACGAGAATTACATGAAGCTTTATCAGATTCCATACTACGATGGCCAACCGGCTACTCGAAATGCCGTTCAGGAGAGCGCGGTGGGCGACTTATGGGGCTTCGACGACGAAAACGTTAATGCATGCGTGACGTCGTCCGCCATGTGA 1443 0.5225 MGETREMGRSCKNGVLGFVTWLVPIPNLPPSQDTCLEISSSIYPDARVTVQCSHTNMFYKIHTPLKTLPPNDGDDDDEMGALYFDRSGFPLPRFTQFPCSEVIRNQRCPSSRAAFCLVAHVIKPTDGRWAMGDGHTMCWVFYQQMNSPFLAIFPEPILLAAFQNAASTYHAAERRPDHLYYPCRFPCYFQHSISHWLTSFAFSRLSNPFVHLSESGSSMCRGAIIADFIPRHRGRRLTPSDIWPDTFGNHQDLPSEFSHSVPLQSPQLSTVAEKAEKPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTYNTAEEAARAYDREARKIRGKKAKVNFPNEDEDRSVQARRNPPAPPTSLNLEFGYDLNQAGATFSSRRGESASEYSTMKLLESNQRKGSDGGKTEKVGIDGEEEENQAGELSEELMAYENYMKLYQIPYYDGQPATRNAVQESAVGDLWGFDDENVNACVTSSAM 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g3020 480 ProSiteProfiles AP2/ERF domain profile. 286 343 IPR001471 GO:0003700|GO:0006355
Alju03g3020 480 PRINTS Ethylene responsive element binding protein signature 287 298 IPR001471 GO:0003700|GO:0006355
Alju03g3020 480 PRINTS Ethylene responsive element binding protein signature 309 325 IPR001471 GO:0003700|GO:0006355
Alju03g3020 480 MobiDBLite consensus disorder prediction 341 368 - -
Alju03g3020 480 CDD AP2 287 344 IPR001471 GO:0003700|GO:0006355
Alju03g3020 480 SMART rav1_2 286 349 IPR001471 GO:0003700|GO:0006355
Alju03g3020 480 Pfam AP2 domain 287 335 IPR001471 GO:0003700|GO:0006355
Alju03g3020 480 Gene3D AP2/ERF domain 286 344 IPR036955 GO:0003700|GO:0006355
Alju03g3020 480 PANTHER DNA-BINDING DOMAIN 266 403 IPR044808 GO:0003700|GO:0009873
Alju03g3020 480 MobiDBLite consensus disorder prediction 401 418 - -
Alju03g3020 480 FunFam Ethylene-responsive transcription factor 2 285 344 - -
Alju03g3020 480 SUPERFAMILY DNA-binding domain 286 344 IPR016177 GO:0003677
Alju03g3020 480 MobiDBLite consensus disorder prediction 395 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g3020 Alju-ChrAlju03 55225745 55229630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g3020 219 344 AP2-EREBP Transcription Factor Family AT3G16770 54.412 2.17e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju03g3020 AP2 1.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g3020 03 55225745 55229630 Alju03g3020 03 55225745 55229630 ECH