Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2989 ATGAAGTTCTGCAAGAAATACGAGGAGTACATGCAAAGACAGCAGAAGAAACTTCCTGGAGTTGGGATCAAGAAGCTCAAGAAGATATTGAAAAAATGCAGCAGAGACTGCCGATCACGCAAAGGCCTCAATGAAGCCTTTGGCGTCCGAAAATGCAGCGACCAATGCCCATTGTGTGATGGAAGCTTCTTCCCTTCCCTCCTCAACGGGATGACAGAAGTAGTAGGTTGCTTTAATGAGCGTGCCCAACAATTGTTGAGGCTACATCTTGCTACTGGCCTCAGAAAGTACTTGTTCTGGTTCAAAGGCAAATTTCCCGGAAAAGAAACTGTCCTCGTTCAAGAAGGCAAAGACCTGGTTATTTATGCTCTAATTAATGCCACTGCAATTCGAAAGATACTCAAGAAATATGATAAGATTCATTATTCAAGGCAAGGACAATTATTTAAGTCACAAGCACAGAGTAAGCACATGGAAATTCTCCAGAGTCCCTGGCTTTGTGAGCTCATGGCCTTTCACATCAATTTAAGGGAAAGCAAGAACAAATCAATGAAGAAGCCACCTGCTTTCTTTGATGGATGTTCCCTCTCATTTAAGGATGATAAACCATCTCTTACTTGTGAGCCATTTGATTCCATTAAACTTGATATTGACTTGACTTGCTCTATATGCTTGGAAACAGTATTTGATCCAGTTTCTCTTACTTGTGGCCACATATTCTGCTACATGTGTGCTTGCTCATCTGCATCAGTAACTATTGTTGACGGACTTAAGGCAGCAAATTCAAATGCAAAATGTCCTCTATGCCGATTGGGAGGAGTCTATCAAGGTGCCGTACGCTTGGAAGAATTAAATATTTTGTTAGGGCGAAGCTGCAAGGGTTATTGGGAACAAAGGCTTCAAACAGAGAGGGTTGCGAGGGTTAAGCAAATAAAAGAGCATTGGGATTCGCAGTGCAGGGCATTTGTGGGCGTTTGA 978 0.4243 MKFCKKYEEYMQRQQKKLPGVGIKKLKKILKKCSRDCRSRKGLNEAFGVRKCSDQCPLCDGSFFPSLLNGMTEVVGCFNERAQQLLRLHLATGLRKYLFWFKGKFPGKETVLVQEGKDLVIYALINATAIRKILKKYDKIHYSRQGQLFKSQAQSKHMEILQSPWLCELMAFHINLRESKNKSMKKPPAFFDGCSLSFKDDKPSLTCEPFDSIKLDIDLTCSICLETVFDPVSLTCGHIFCYMCACSSASVTIVDGLKAANSNAKCPLCRLGGVYQGAVRLEELNILLGRSCKGYWEQRLQTERVARVKQIKEHWDSQCRAFVGV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2989 325 CDD RING-HC_BAH1-like 211 284 - -
Alju03g2989 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 323 IPR013083 -
Alju03g2989 325 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Alju03g2989 325 Pfam Zinc finger, C3HC4 type (RING finger) 221 269 IPR018957 GO:0046872
Alju03g2989 325 ProSiteProfiles Zinc finger RING-type profile. 221 270 IPR001841 -
Alju03g2989 325 SMART ring_2 221 269 IPR001841 -
Alju03g2989 325 ProSitePatterns Zinc finger RING-type signature. 236 245 IPR017907 -
Alju03g2989 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
Alju03g2989 325 SUPERFAMILY RING/U-box 214 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2989 Alju-ChrAlju03 55034033 55041470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2989 218 270 C3H Transcription Factor Family AT4G28270 39.655 1.08e-06 46.6