Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2980 ATGGTCGAAACCAGAGGGGGCTCGTCTAGTTCCAAGCGCTCTCGCTCCCCATCCTCTTCTTCCGACGTCAAAAAACCCAAGTTGTCCAAGGATTCTTCGCCAAGAAGTCTGCCGTCGGCGGAAAATCTTGGTACTGCCAACGAGCCTGGAAATGAATCCCGAGAGACGGAGCCAAGTCCGTCTAATCTTCCACGTTCCGGTTCATTGAAAGGCACGGACGTTTGTGACGCTACGCTATCTGAGCAATCTCCCACCATGGGCGTCATCGAAGGCGAGGTTTTGACATCGCCGCAGCCTCTAGGCGAAACTGCGGTGGACGAAGAGAAATCAAAGGTGGTTGGAGCGGTCGCTGATGGCGGGTCCAAGAAATGCCCAGGGAAAACGAGCCCGAAGGCTGCATGGGGAAGGCTTATTTCTCAGTGTTCCCAGAATCAACATCTGTCCTTGTGCGGTTCTCAATTCACTGTTGGTCATGGCCGTCAATGCAATTTATGGCTTAATGATCCAGCTGTTAGTAATGTTTTGTGCAAGTTGAAGCTCGCCAAGCATGGAGGTTCATCCGTTGGATTACTGGAAATCACAGGGGATAAAGGTGCCGTACAAGTTAATGGCTGGGATTACCAAAAAAATTCCCGGCTGATATTGAATGCAGGTGATGAGGTGGTCTTCAGTTCTGACAAGAAGGCTTATATTTTTCAGCAGCTCACCAATAACAATTTCACTGCTGCTGGGATACCTTGTTCTAATGCTGAGGTTTCATTACAAGCTTCTGGCCATGGGGATGATACTACTGACAGGAAGGACACCACCAATAATGGCAATCCAGCTGAAGTTTCTGCTGAGAAAACTATTCTTGCACCCTCCGCCACTGCCAATGAAAATTTTAATCTTGACAGCATGAAAGTGGATGTTGGGAGGTTGACAGGGGCCACTCATGAGTTAAGGCCTTTGTCGTGTAAGCTTGCTGGCATGTGTTTAAAGGATATTGATCCCCAAGCTGATTTAGTTTCCATCGGGCAGCAAGCATTCAAAAACAGTCTACAACAAGGAATTCTCAATCCTGATGATATTGATGTGTCATTTGAAAACTTCCCATATTATATAAGTGATTCTACAAAAAGTGTTTTGGCTGATTCTATGTACATTCATTTGAAGCGAAATGATTTTATAAAGTTTGCTTCAGGCCTACCTTCACTGTGTCCCCGAATATTGTTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAAACCTTGTGCAAGGCTCTTGCAAAACATTTTGGTGCTAGGCTACTAATTGTGGATTCTTTTACCCTGCCTGGTGGAACACCATCAAAGGATTCTGATTCTCCTAAACAAAGTTTAAGGCCTGAAAAAGCGTATGCAAAACAGAGTGCCCAGCTTGCCACATTACAGCATAAAAAACCAACTTCAAGTGTCAATGCTGATCTTATTGATGGATCCTCATTAAGTTCTCAGGTTATGCTGAAGCAGGAGGTATCTACTGCATCGTCCAAAGGCCCTATGCTTAAAACAGGTGACCGAGTAAAATTTGTTGGCAACCTTCCCTCTGCAGTCTCTTTATTACAAAATTATCCTTCAAGGGGACCTAGGTATGGCTCCCGGGGAAAAGTTCTTCTTGCTTTTGAAGAAAACGAGTCTTCAAAAATTGGTGTTAGATTCGATAAACCAATTCCAGATGGAAATGATCTTGGAGGCCTATGTGAAGATGATCGTGGTTTTTTTTGTTCTGCTAATCATTTACTACGAGTGGATAAATCTGGAGGGGATGAAACTATCAAGCTTGCTATTAACGAAATCTTTGAGGTTGTTTTTTCCCAGAGTAAAAGTGGTGGGTTGGTGTTGTTCATGAAAGACATAGAGAAGGCTATGATTGGGAACTCAGAAGTCTTAAAAAGCAGACTTGAAAGTTTGCCACAAAATGTAGTTGTAATTGGTTCACATACTCAGCTGGGCAATCATAAGGACAAGATCCAGCCTGGTAGCCTTCCGTTTACAAAATTTGGGAGCACTCGGGCAGCTTTATTTGATCTTGCTCTTCCGGATAACCTTAGTAGATTGCATGATAGGAGCAAGGAAACCACCAAAACAATGAAGCAACTTAGACTCCTTTTTCCCAACGAAGTATCAATACAGCCGCCTCAGGATGAGGCTTTGCTCTCTCATTGGAAGAAGCAGTTAGAACATGATGTTGAAACTATGAAAGCTCAGTCAAATATTGTCTGCATTCGCACAGTTCTTGACAAGATTGGATTTATTTGCCCTGATCTTGAAAATCTGTGTGTTAAAGATCAAGCCCTAACAACTGAAGTTGTGGGGAAAATTGTTGGTTGGGCATTAAGTTACCAGCTAATGCATTCATCTGAAGACTCAATCAAAGACTCTAAGATTATGTTGTCTACTGAAAGCATTAAGTATGGGCTGAACATTCTACAAGGCATCCAAGGAGATAGCAAGAACTTAAAGAAATCACTGAAGGATGTGATTACTGATAATGAGTTTGAGAAAAATTTCCTTGCTGATGTTATTCCTCCAAGTGACATTGGGGTCAAATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAATGAATTGGTTATGCTTCCCCTTCAGAGGCCTGAATTGTTTTCCAAAGGACAGTTGGCAAAGCCTTGCAAGGGAGTATTGCTGTTTGGGCCCCCTGGTGTTGGAAAAACAATGCTTGCAAAGGCTGTAGCTACTGAGGCTGGAGCAAATTTCATCAACATCTCAGTGTCCAGCATTACCTCAAAGTGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTATTTTCTCTGGCAAGCAAAATTGCTCCTAGTGTTATTTTTGTTGACGAGGTTGATAGTTTGTTACGAAGACGTGAAAATCATGGTGAGCATGAGGCTATGCGTAAAATTAAGAATGAATTTATGGTGAATTGGGATGGTCTGCGAACAAAAGACAATGAGCGCATACTTGTACTTGCTGCCACAAATAGACCCTTTGACCTTGATGAGGCTGTTATTAGGAGGCTTCCACGAAGATTGATGGTCAATTTGCCAGATGCTCCAAACAGAGTAAAAATTCTTAAAGTGATGTTAGCAAAAGAAGATTTGGCACCTGATGTCGATCTGGGAGCAATATCAAACATGACTGATGGATATTCTGGGAGTGACCTTAAAAATCTGTGTGTCACGGCAGCTTACTGTCCAATTAGAGAGATATTGGAGAAGGAAAAGAAGGAGAGAAGTTTGGCTCTGGCTGAGAACAGACCTTTACCTCCATTGTATGGCAGTACTGACATTCGGCCCTTAAAGATGGAGGATTTTAGACATGCACATGAGCAGTTGGGCGCAAGCGTGTCGTCGGAGTCAAGAAATATGAACGAACTGCTCCAATGGAATGAGCTTTACGGGGAAGGTGGATCCAGAAGAATTACACCTCCAAGCTATTTTATGTAA 3486 0.43 MVETRGGSSSSKRSRSPSSSSDVKKPKLSKDSSPRSLPSAENLGTANEPGNESRETEPSPSNLPRSGSLKGTDVCDATLSEQSPTMGVIEGEVLTSPQPLGETAVDEEKSKVVGAVADGGSKKCPGKTSPKAAWGRLISQCSQNQHLSLCGSQFTVGHGRQCNLWLNDPAVSNVLCKLKLAKHGGSSVGLLEITGDKGAVQVNGWDYQKNSRLILNAGDEVVFSSDKKAYIFQQLTNNNFTAAGIPCSNAEVSLQASGHGDDTTDRKDTTNNGNPAEVSAEKTILAPSATANENFNLDSMKVDVGRLTGATHELRPLSCKLAGMCLKDIDPQADLVSIGQQAFKNSLQQGILNPDDIDVSFENFPYYISDSTKSVLADSMYIHLKRNDFIKFASGLPSLCPRILLSGPAGSEIYQETLCKALAKHFGARLLIVDSFTLPGGTPSKDSDSPKQSLRPEKAYAKQSAQLATLQHKKPTSSVNADLIDGSSLSSQVMLKQEVSTASSKGPMLKTGDRVKFVGNLPSAVSLLQNYPSRGPRYGSRGKVLLAFEENESSKIGVRFDKPIPDGNDLGGLCEDDRGFFCSANHLLRVDKSGGDETIKLAINEIFEVVFSQSKSGGLVLFMKDIEKAMIGNSEVLKSRLESLPQNVVVIGSHTQLGNHKDKIQPGSLPFTKFGSTRAALFDLALPDNLSRLHDRSKETTKTMKQLRLLFPNEVSIQPPQDEALLSHWKKQLEHDVETMKAQSNIVCIRTVLDKIGFICPDLENLCVKDQALTTEVVGKIVGWALSYQLMHSSEDSIKDSKIMLSTESIKYGLNILQGIQGDSKNLKKSLKDVITDNEFEKNFLADVIPPSDIGVKFDDIGALENVKDTLNELVMLPLQRPELFSKGQLAKPCKGVLLFGPPGVGKTMLAKAVATEAGANFINISVSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSLLRRRENHGEHEAMRKIKNEFMVNWDGLRTKDNERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRVKILKVMLAKEDLAPDVDLGAISNMTDGYSGSDLKNLCVTAAYCPIREILEKEKKERSLALAENRPLPPLYGSTDIRPLKMEDFRHAHEQLGASVSSESRNMNELLQWNELYGEGGSRRITPPSYFM 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2980 1161 SMART AAA_5 893 1030 IPR003593 GO:0016887
Alju03g2980 1161 MobiDBLite consensus disorder prediction 1 17 - -
Alju03g2980 1161 Gene3D - 1029 1123 - -
Alju03g2980 1161 Pfam AAA+ lid domain 1050 1086 IPR041569 -
Alju03g2980 1161 Pfam ATPase family associated with various cellular activities (AAA) 897 1026 IPR003959 GO:0005524|GO:0016887
Alju03g2980 1161 ProSitePatterns AAA-protein family signature. 1000 1019 IPR003960 GO:0005524|GO:0016887
Alju03g2980 1161 MobiDBLite consensus disorder prediction 1 73 - -
Alju03g2980 1161 Gene3D - 496 599 IPR047008 -
Alju03g2980 1161 Gene3D - 855 1134 IPR027417 -
Alju03g2980 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 856 1135 IPR027417 -
Alju03g2980 1161 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 341 1160 - -
Alju03g2980 1161 MobiDBLite consensus disorder prediction 254 277 - -
Alju03g2980 1161 MobiDBLite consensus disorder prediction 32 73 - -
Alju03g2980 1161 Gene3D - 133 242 - -
Alju03g2980 1161 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 855 1031 - -
Alju03g2980 1161 SUPERFAMILY SMAD/FHA domain 134 231 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2980 Alju-ChrAlju03 54975970 54987643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2980 892 1097 Calmodulin-binding Proteins AT3G56690 34.597 5.53e-30 127