Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2963 ATGAGCGATAACTCAGAGAGAGAAGGCTTTAATAAGTACAACTTCAACAACAACACAGGATCTCATCATCATCAAGATGGGGGAGTCATCAAAGAGCAAGATCGGTTGCTTCCAATAGCGAATGTTGGGAGGATTATGAAGCAAATTCTGCCTCCTAACGCCAAAATCTCCAAAGAAGCCAAAGAAACCATGCAAGAATGTGTTTCTGAGTTCATAAGCTTCGTGACTGGGGAGGCCTCTGACAAGTGTCACAAGGAGAAGCGCAAGACAGTGAACGGCGACGATATTTGCTGGGCCCTCGCCACTCTAGGGTTTGATGACTACGCCGAGCCCCTCAAGAGGTATTTGCTTAAGTTTAGGGAATCAGAGGGCGAGAGATCTAACCAAAATAAGGCTAACAATATTCATACTGATCATGAACTTAATGTTTTTGGTGATGATCATCATCAAGCTTTTGAATATGGAGGTGAGACTCCTAGGAGAGCCCCCACTACTGCTACTAGTGCTTCCTCTGCTAGTGGAACCTCATTGATGAGGTTCAATGGCACCTCTCATTCACACCAGTTTTCAAACTTCTAG 579 0.4473 MSDNSEREGFNKYNFNNNTGSHHHQDGGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLLKFRESEGERSNQNKANNIHTDHELNVFGDDHHQAFEYGGETPRRAPTTATSASSASGTSLMRFNGTSHSHQFSNF 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2963 192 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Alju03g2963 192 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Alju03g2963 192 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Alju03g2963 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
Alju03g2963 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Alju03g2963 192 MobiDBLite consensus disorder prediction 153 192 - -
Alju03g2963 192 MobiDBLite consensus disorder prediction 7 24 - -
Alju03g2963 192 SUPERFAMILY Histone-fold 33 132 IPR009072 GO:0046982
Alju03g2963 192 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634|GO:0006355|GO:0043565
Alju03g2963 192 MobiDBLite consensus disorder prediction 1 28 - -
Alju03g2963 192 Gene3D Histone, subunit A 24 151 IPR009072 GO:0046982
Alju03g2963 192 MobiDBLite consensus disorder prediction 161 192 - -
Alju03g2963 192 FunFam Nuclear transcription factor Y subunit B-3 25 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2963 Alju-ChrAlju03 54897397 54897975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2963 10 128 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.917 8.45e-62 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Alju03g2963 CBFD_NFYB_HMF 1.5e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2963 03 54897397 54897975 Alju03g2963 03 54897397 54897975 ECH