Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2960 ATGGCAACGAACAGATTTGTGTGTGATATATGCAACAAAGGGTTTCAGAGGGACCAGAACCTGCAGTTGCACAGGAGAGGTCACAATCTGCCGTGGAAACTGAGACAGAGAGCGAGCAACGAGGTGAGCAAGAAGCGAGTTTACGTGTGTCCAGAGCCTTCGTGCGTCCATCATAGCCCAGCTCGAGCACTCGGAGACCTCACCGGAATCAAAAAGCACTTTAGCCGCAAACACGGCGAGAAGAAATGGAAATGTGACAAATGCTCCAAAAAATACGCCGTCCAGTCTGATTGGAAAGCCCACCAGAAAACCTGCGGTACCCGCGAATACAAATGCGATTGTGGTACCATATTTTCCAGGAGAGATAGTTTTATCACTCACAGAGCATTTTGTGATGCATTGGCTGAAGAAAACAACAGGGTGAATTCTGCAGTATCTCTAAACACTCATTCACACATATTATCCCCTCCAGAAATTATTCCGGTGCCGTTCAATTTGACGAGCACCAGCATGTGGGGAGGCATGTTCACCACCACTTCTGGCGCACTTCTCGGTGGTCCAAAAGGCTTGCCTCCTTCTCTTCCCCAGCCTAGCTCCCCTGTTTTCAATTCCGTCCAAGATGGCCAGAGAGTTTCAGAGTCAGCTCACGCGTCTGCCACGGCTTTACTGCAGAAAGCAGCTCAAATGGGAGCCACCGTGAGCAATAATAGCAATAACTCTCACATGGTTCAAAAAGGGTATGTTACTTCCATGGCAGGTCCTGATGGGATTAGTAGTGGAGGTGGAGAATTCAGCAACCTGTTGTTCCAGAAAGGTCCGCAAGAAATGTCGCAATCGTTTGACTCTTACAATGGATCATCTGCTTTGAATGACATGGAAATGCTGAGCCAAATGGTGAGGGGAGGAGCAAGTGAGATGACCAGAGTTCATGACTTCTTGGGCATTGGGGGACCCACTCCCATGCCGCCCAATTTGCAGGGGGATTGGAGTTGGAAGCAATTATGA 1005 0.4886 MATNRFVCDICNKGFQRDQNLQLHRRGHNLPWKLRQRASNEVSKKRVYVCPEPSCVHHSPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNRVNSAVSLNTHSHILSPPEIIPVPFNLTSTSMWGGMFTTTSGALLGGPKGLPPSLPQPSSPVFNSVQDGQRVSESAHASATALLQKAAQMGATVSNNSNNSHMVQKGYVTSMAGPDGISSGGGEFSNLLFQKGPQEMSQSFDSYNGSSALNDMEMLSQMVRGGASEMTRVHDFLGIGGPTPMPPNLQGDWSWKQL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2960 334 SMART c2h2final6 83 103 IPR013087 -
Alju03g2960 334 SMART c2h2final6 6 28 IPR013087 -
Alju03g2960 334 SMART c2h2final6 48 78 IPR013087 -
Alju03g2960 334 Gene3D Classic Zinc Finger 61 142 - -
Alju03g2960 334 FunFam Zinc finger protein MAGPIE 2 29 - -
Alju03g2960 334 Gene3D Classic Zinc Finger 6 49 - -
Alju03g2960 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Alju03g2960 334 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 315 IPR031140 -
Alju03g2960 334 SUPERFAMILY beta-beta-alpha zinc fingers 5 104 IPR036236 -
Alju03g2960 334 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Alju03g2960 334 FunFam protein indeterminate-domain 5, chloroplastic-like 61 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2960 Alju-ChrAlju03 54884895 54885983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2960 1 237 IDZ Gene Family AT3G50700 54.639 5.16e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju03g2960 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1529 01 12258669 12260454 Alju03g2960 03 54884895 54885983 CCT
Alju03g2960 03 54884895 54885983 Alju03g2960 03 54884895 54885983 ECH