Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2939 ATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCTAGGAAAGGATTTGAGGTGAAGTTTGGGTATGGAGTGAGATCGCGGTCACAGTCACACCGCGATGCTGGGGATCAGGTGATGGTTGGCGATGGTTTGACGCAGAGTTGTTGGGCTAATATGCCCCCAGAGCTTCTGAGGGATGTGTTAATGAGGATTGAGGCCTCTGAAGATACGTGGCCAGCCCGAAAACATGTGGTTGCTTGTGCTGGTGTCTGCCGTAGTTGGAGAGAAATCGTGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTAACGCTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTTCAGTGCTATATTAAACGTCATCGCAGTAATCAAACATATTATCTGTACCTCAGTTTAAACCAAGCTTCAGTCGATGATGGCAAGTTCCTTCTTGCTGCACGGAAATGTCGACGTCCTACCCATACAGAATATATCATTTCTATAAACTGCGAAAACGTATCAAGAGGGAGCAGCACTTACATTGGAAAGTTGAGGTCAAATTTTCTGGGTACCAAATTCACAGTGTATGATGCGCACCCTCCAATTTGTGGTACCAGAGTGACTAAATCTCGTTCAACTAGATCAGTTAGTCTCAAGCAAGTTTCTCCAAGAGTTCCTGCTGGCAATTATCCCATTGCGCATGTCTCATATGACCTGAATGTCCTGGGCTCCAGGGGCCCAAGGATAATGCACTGTGTTATGGATGCCATCCCAGCTTCAGCTGTTGAGCCAGGAGGTCAAAATCAACTCGCTTGGAAAACTTCCAATCAGTACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAACAAATCCCCTAGGTGGCATGAGCAACTCCAGTGTTGGTGTCTAA 936 0.4573 MSFRSIIQDIKGEFGSISRKGFEVKFGYGVRSRSQSHRDAGDQVMVGDGLTQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACAGVCRSWREIVKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRHRSNQTYYLYLSLNQASVDDGKFLLAARKCRRPTHTEYIISINCENVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGTRVTKSRSTRSVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGQNQLAWKTSNQYLCLPKTRECWYYKTNPLGGMSNSSVGV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2939 311 Gene3D Tubby Protein; Chain A 115 299 IPR025659 -
Alju03g2939 311 Pfam F-box domain 55 101 IPR001810 GO:0005515
Alju03g2939 311 CDD F-box_AtTLP-like 55 99 - -
Alju03g2939 311 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Alju03g2939 311 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Alju03g2939 311 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Alju03g2939 311 PANTHER TUBBY-RELATED 30 273 - -
Alju03g2939 311 SUPERFAMILY Tubby C-terminal domain-like 104 282 IPR025659 -
Alju03g2939 311 Pfam Tub family 116 275 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2939 Alju-ChrAlju03 54732045 54734401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2939 1 272 TUB Transcription Factor Family AT2G47900 75.182 2.96e-152 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Alju03g2939 Tub 9.1e-54 CL0395