Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2904 ATGAGCATCTCTATGGTAATGAGCAGACATGTAACGCAGCCGCCCCTTATCAATAGTCCCCCCAGCGGTCTAAAATCGAATCTGATCACTCTTCCACGGCAGAAAGAGAAGGTGGTGGTGGTCATGGGAGCCACGGGCACCGGAAAATCCAGGCTCTCCATCGACCTGGCCACCCTTTTTCCTTCACAAATCATCAATTCCGACAAAATGCAAGTCTACGAAGGCCTTGACATAGTCACCAACAAAATCATTAAGGAAGACCAACGAGGCGTGCCTCACCATTTGTTAGGAACAGAGAGCCCCAACTCAGAGTTCACAGCCTCCCACTTCCGTGACGCCGCTTTACTCGCCATCGAGTCAATTACGTCTTCCGGACAGCTTCCCATCATCGTGGGAGGATCCAACTCATATATTGAGGCACTGATCGACGACGACGACTATAAATTCCGATCAAGGTATGATTTCTGTTGTCTCTGGGTAGACGTGTTATTGCCGGAGCTCGACCAATACGTGGCCAAACGGGTTGATCAAATGTTGGAGAGTGGAATGGTAGATGAACTGAGGCCATTTTTCAATCCAAAGGGAGATTACTCTCGAGGGATTATGAAAGCTATCGGAGTTCCAGAGTTCCATCAGTATTTTCGAAAGGAATCGTTTACTAGGGATGAAGGAATCAAGCAGAGGTTACTGGAAGAAGCGGTGAATGAAATGAAGAAGAACACGCACAAATTGTCACGTAAACAATTGGGGAAGATTCAGAGACTGTGCGATGTGAAGAGATGGAAGATTCATCGGCTAGACGCCACAACCGTGTTCCGCAAGCATGGGGAAGAAGCAGAGGAGGCATGGAAGAAGGTGGTGGCAGAGCCAAGTGCTATGATCGTAGCCAGGTTTCTTTACTATTTACCATCTGCGAATGTTGGCGCTGACCTGAGACTGTCGTCATCTTCTTCGGCCCTGGAAAGCGCATGGCAACGGCAACGTGCTGAATACCAACGCCTCTCCATCTTCTAA 1014 0.4872 MSISMVMSRHVTQPPLINSPPSGLKSNLITLPRQKEKVVVVMGATGTGKSRLSIDLATLFPSQIINSDKMQVYEGLDIVTNKIIKEDQRGVPHHLLGTESPNSEFTASHFRDAALLAIESITSSGQLPIIVGGSNSYIEALIDDDDYKFRSRYDFCCLWVDVLLPELDQYVAKRVDQMLESGMVDELRPFFNPKGDYSRGIMKAIGVPEFHQYFRKESFTRDEGIKQRLLEEAVNEMKKNTHKLSRKQLGKIQRLCDVKRWKIHRLDATTVFRKHGEEAEEAWKKVVAEPSAMIVARFLYYLPSANVGADLRLSSSSSALESAWQRQRAEYQRLSIF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2904 337 Pfam IPP transferase 150 249 - -
Alju03g2904 337 Pfam IPP transferase 71 144 - -
Alju03g2904 337 Gene3D - 35 299 IPR027417 -
Alju03g2904 337 FunFam Adenylate isopentenyltransferase 5, chloroplastic 164 263 - -
Alju03g2904 337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 146 IPR027417 -
Alju03g2904 337 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 164 263 - -
Alju03g2904 337 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 35 299 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2904 Alju-ChrAlju03 54498365 54499378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2904 151 299 C2H2 Transcription Factor Family AT2G27760 32.386 2.92e-21 92.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1915 01 15752254 15753255 Alju03g2904 03 54498365 54499378 CCT
Alju03g2904 03 54498365 54499378 Alju03g2904 03 54498365 54499378 ECH