Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2896 ATGGCTGCGCCGCCTCTCTCCCCCACTCTTCAGACCATGCTCCAGGCCGCCGTCCAATCGGTTCAGTGGACTTATAGTCTCTTCTGGCAACCTTGTCCCCAACAAGGGATTCTGGTGTGGGCGGATGGTTACTACAATGGGGCAATTAAGACTCGCAAAACAGTCCAACCAATGGAAGTTACTGCCGAGGAAGCCTCTCTCCAGAGAAGCCAGCAACTTAGGGAGCTCTACGAATCATTGTCGGCCGGAGAGACCAACCCTCCCGCTCGACGGCCTTGTGCCGCCTTGTCTCCTGAGGACCTCACCGAATCTGAATGGTTCTATTTGATGTGCGTCTCTTTCTCCTTTCCTCCTGGCGTCGGGTTACCGGGGAAAGCATATGCGAGGAGGCAGCATGTATGGCTTGCCGGTGCAAACGAGGTGGACAGCAAAACGTTTTCAAGAGCTATTCTCGCCAAGACCGTGGTGTGCATACCTCTGTTGGACGGCGTCGTAGAGTTGGGCACAACAGATAAGGTTCAGGAAGACCTTAATTTTATCCAACATGTAAAGAGCTTCTTCATAGATCACCAGCGGCAGCACCACCCTCCTCCGCCGAAGCCCGCCCTCTCTGAGCACTCAACCTCCAACCCCGCCACCTCTTCCGACCACTCCCGCTTCCAGTCCACTCCCATCCCCTCCGCCATGTACTCCGCTGTGGACCCATCACCCGCCACCCCACCCGGTCCTAACAACCACATCGATGAAGATGACGACGAGGATGATGAAGAAGAGGCCGAGTCCGACTCCGACTCCGAGGCAGAAACAGCCCGGGACAGCCCCCCAACGTCTACGCCGGAGGCTTCCGGCGTGGCAGTTGCCACTGCAGCAGAACCAAGCGAGTTAATGCAGCTGGAGATGTCGGAGGATATCCGGGTAGGATCACCGGACGATGGCTCCAACAATCTCGACTCAGATTTCCATATGCTGGCGGTGAGCCACCCAGCGGATCACGAGGGACGAGCGGACTCGTACAGGGCCGAGTCGACCCGGAGGTGGGCCGAGCCAATGCTCCAACTACCAGCTTCAGAAGGCGCTCAACTAGAAGACCTCACACAAGAGGACACCCACTACTCTCAAACAGTGTCCACCATCCTCCACAATCAGTCTATCCGGTGGGCCGAATCTCCCTCCGTCGACTACATAACTTACTCCTCCCAATCCGCTTTTGCTAAGTGGAACACCCGTTCCGACCACCACAACCTCCTCCTCCACGCGTCCCCCGACGGCACCTCTCAGTGGCTCCTCAAGTACATTTTGTTCACCGTTCCTTTCCTTCACGCCAAGTACCAAGACGACAACCCGCCCACGCCCCGAGATGGCGCCGATCCCATCACGCGCCTCCGTGGAAAGGGAACGCCGCAGGATGAACTAAGCGCCAACCACGTACTGGCCGAGCGACGCCGCCGCGAGAAGCTCAACGAGAGGTTCATCATATTGAGATCTCTCGTGCCCTTCGTCACAAAAATGGACAAGGCATCTATATTAGGGGACACCATCGAGTATGTGAAACAGTTGCGCAAAAAGATCCAAGATCTGGAGGCGAGTAACCGCCAGATGGAAGCAGAGCAACAACAGTCAAGGGAGCAACAGAGGAGCTTGACGAGAGTGGGGTCGGACAAGAGGAAGATGAGGATCGTGGAGGGGAGCGGAGGGATGAGGAAGCCCAAGTCAGTGGAGGCGTCACCGCCGCCATCGCCGTCGGGAGTGGTGACATCGGTGCAGGTGTCGATCATAGAGAGCGATGCACTGTTGGAACTGGAGTGCGAGAACAGGGAGGGGTTGTTGCTGGATGTGATGCAAATGCTGAGAGAGATGAGGATAGAGGTGACGACGGTGCAGTCGTCGCTGAACAACGGGGTGTTCGTGGCGGAGCTGAGGGCGAAGGTGAAGGAAAATCCGAACGGAAAGAAGACCAGCATAGTTGAAGTGAAGAGGGCCCTCAACCAAATCATACCCCACAATGATTGA 2010 0.5662 MAAPPLSPTLQTMLQAAVQSVQWTYSLFWQPCPQQGILVWADGYYNGAIKTRKTVQPMEVTAEEASLQRSQQLRELYESLSAGETNPPARRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLAGANEVDSKTFSRAILAKTVVCIPLLDGVVELGTTDKVQEDLNFIQHVKSFFIDHQRQHHPPPPKPALSEHSTSNPATSSDHSRFQSTPIPSAMYSAVDPSPATPPGPNNHIDEDDDEDDEEEAESDSDSEAETARDSPPTSTPEASGVAVATAAEPSELMQLEMSEDIRVGSPDDGSNNLDSDFHMLAVSHPADHEGRADSYRAESTRRWAEPMLQLPASEGAQLEDLTQEDTHYSQTVSTILHNQSIRWAESPSVDYITYSSQSAFAKWNTRSDHHNLLLHASPDGTSQWLLKYILFTVPFLHAKYQDDNPPTPRDGADPITRLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEASNRQMEAEQQQSREQQRSLTRVGSDKRKMRIVEGSGGMRKPKSVEASPPPSPSGVVTSVQVSIIESDALLELECENREGLLLDVMQMLREMRIEVTTVQSSLNNGVFVAELRAKVKENPNGKKTSIVEVKRALNQIIPHND 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2896 669 Gene3D - 595 665 - -
Alju03g2896 669 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Alju03g2896 669 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 543 IPR036638 GO:0046983
Alju03g2896 669 Pfam Helix-loop-helix DNA-binding domain 473 520 IPR011598 GO:0046983
Alju03g2896 669 MobiDBLite consensus disorder prediction 547 563 - -
Alju03g2896 669 MobiDBLite consensus disorder prediction 247 265 - -
Alju03g2896 669 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 187 IPR025610 -
Alju03g2896 669 MobiDBLite consensus disorder prediction 205 229 - -
Alju03g2896 669 MobiDBLite consensus disorder prediction 190 286 - -
Alju03g2896 669 MobiDBLite consensus disorder prediction 530 583 - -
Alju03g2896 669 MobiDBLite consensus disorder prediction 530 546 - -
Alju03g2896 669 MobiDBLite consensus disorder prediction 443 473 - -
Alju03g2896 669 Gene3D - 471 545 IPR036638 GO:0046983
Alju03g2896 669 SMART finulus 476 525 IPR011598 GO:0046983
Alju03g2896 669 Coils Coil 516 546 - -
Alju03g2896 669 PANTHER TRANSCRIPTION FACTOR TT8 3 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2896 Alju-ChrAlju03 54447172 54452283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2896 305 668 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 39.295 7.14e-61 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g2896 bHLH-MYC_N 7.1e-48 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2896 03 54447172 54452283 Alju03g2896 03 54447172 54452283 ECH